- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.95 Å
- Oligo State
- homo-dimer
- Ligands
- 1 x NAG- NAG- MAN: alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 2 x CU: COPPER (II) ION(Non-covalent)
CU.5: 3 residues within 4Å:- Chain A: H.520, H.522, H.684
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:H.520, A:H.522, A:H.684, H2O.1, H2O.3
CU.13: 4 residues within 4Å:- Chain B: Y.471, H.520, H.522, H.684
4 PLIP interactions:3 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:H.520, B:H.522, B:H.684, H2O.3
- 4 x CA: CALCIUM ION(Non-covalent)
CA.6: 5 residues within 4Å:- Chain A: E.572, K.638, F.663, N.665, E.667
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:E.572, A:E.572, A:F.663, A:E.667, H2O.1
CA.7: 6 residues within 4Å:- Chain A: K.106, D.529, L.530, D.531, D.673, L.674
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.529, A:L.530, A:D.673, A:L.674, H2O.1
CA.14: 6 residues within 4Å:- Chain B: K.106, D.529, L.530, D.531, D.673, L.674
6 PLIP interactions:5 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.529, B:L.530, B:D.531, B:D.673, B:L.674, H2O.3
CA.15: 4 residues within 4Å:- Chain B: E.572, F.663, N.665, E.667
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:E.572, B:E.572, B:F.663, B:E.667
- 6 x IMD: IMIDAZOLE(Non-covalent)
IMD.8: 2 residues within 4Å:- Chain A: Y.176, Y.394
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Y.394
- pi-Stacking: A:Y.176
IMD.9: 7 residues within 4Å:- Chain A: P.347, V.462, R.463, S.464, W.475, T.477
- Ligands: IMD.10
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:S.464
IMD.10: 8 residues within 4Å:- Chain A: P.347, I.363, L.365, D.476, T.477, I.487, F.526
- Ligands: IMD.9
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:L.365
IMD.16: 3 residues within 4Å:- Chain B: Y.176, Y.394, L.469
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:Y.394
IMD.17: 6 residues within 4Å:- Chain B: P.347, V.462, S.464, W.475, T.477
- Ligands: IMD.18
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:S.464, B:T.477
IMD.18: 9 residues within 4Å:- Chain B: P.347, S.364, L.365, W.475, D.476, T.477, I.487, F.526
- Ligands: IMD.17
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:L.365
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.11: 2 residues within 4Å:- Chain A: N.592, H.593
No protein-ligand interaction detected (PLIP)NAG.12: 1 residues within 4Å:- Chain A: N.666
No protein-ligand interaction detected (PLIP)NAG.20: 3 residues within 4Å:- Chain B: W.538, N.592, H.593
No protein-ligand interaction detected (PLIP)NAG.21: 1 residues within 4Å:- Chain B: N.666
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:N.666
- 1 x MAN: alpha-D-mannopyranose(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Elovaara, H. et al., Identification of Two Imidazole Binding Sites and Key Residues for Substrate Specificity in Human Primary Amine Oxidase Aoc3. Biochemistry (2011)
- Release Date
- 2011-06-15
- Peptides
- MEMBRANE PRIMARY AMINE OXIDASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.95 Å
- Oligo State
- homo-dimer
- Ligands
- 1 x NAG- NAG- MAN: alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 2 x CU: COPPER (II) ION(Non-covalent)
- 4 x CA: CALCIUM ION(Non-covalent)
- 6 x IMD: IMIDAZOLE(Non-covalent)
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 1 x MAN: alpha-D-mannopyranose(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Elovaara, H. et al., Identification of Two Imidazole Binding Sites and Key Residues for Substrate Specificity in Human Primary Amine Oxidase Aoc3. Biochemistry (2011)
- Release Date
- 2011-06-15
- Peptides
- MEMBRANE PRIMARY AMINE OXIDASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B