SMTL ID : 2y78.1

Crystal structure of BPSS1823, a Mip-like chaperone from Burkholderia pseudomallei

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 0.91 Å

Oligo State

homo-dimer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: N.70 Ligands: GOL.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.70 SO4.2: 6 residues within 4Å: Chain A: A.41, E.42, R.44 Chain B: E.42, R.44 Ligands: SO4.7 9 PLIP interactions: 3 interactions with chain B, 6 interactions with chain A Water bridges: B:E.42, B:E.42, A:E.42, A:R.44, A:R.44, A:R.44 Salt bridges: B:R.44, A:R.44 Hydrogen bonds: A:E.42 SO4.6: 2 residues within 4Å: Chain B: N.70 Ligands: GOL.8 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.70 SO4.7: 6 residues within 4Å: Chain A: E.42, R.44 Chain B: A.41, E.42, R.44 Ligands: SO4.2 9 PLIP interactions: 6 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:E.42 Water bridges: B:E.42, B:R.44, B:R.44, B:R.44, A:E.42, A:E.42 Salt bridges: B:R.44, A:R.44

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: H.52, N.70, D.71, P.72 Ligands: SO4.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.52, A:N.70 Water bridges: A:K.67 GOL.4: 4 residues within 4Å: Chain A: W.56, G.60, R.100, V.125 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.100, A:R.100 Water bridges: A:T.58 GOL.8: 5 residues within 4Å: Chain B: H.52, N.70, D.71, P.72 Ligands: SO4.6 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:H.52, B:N.70 Water bridges: B:K.67 GOL.9: 4 residues within 4Å: Chain B: W.56, G.60, R.100, V.125 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.100, B:R.100 Water bridges: B:T.58

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 2 residues within 4Å: Chain A: K.31, T.102 Ligand excluded by PLIP CL.10: 2 residues within 4Å: Chain B: K.31, T.102 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Norville, I.H. et al., The Structure of a Burkholderia Pseudomallei Immunophilin-Inhibitor Complex Reveals New Approaches to Antimicrobial Development. Biochem.J. (2011)

Release Date

2011-05-25

Peptides

PEPTIDYL-PROLYL CIS-TRANS ISOMERASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

PEPTIDYL-PROLYL CIS-TRANS ISOMERASE