SMTL ID : 2y7d.1

Crystal structure of the 3-keto-5-aminohexanoate cleavage enzyme (Kce) from Candidatus Cloacamonas acidaminovorans (orthorombic form)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.59 Å

Oligo State

homo-tetramer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain A: H.52, H.54, E.236 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.52, A:H.54, A:E.236, H2O.10, H2O.10 ZN.2: 3 residues within 4Å: Chain B: H.52, H.54, E.236 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.52, B:H.54, B:E.236, B:E.236, H2O.19 ZN.4: 3 residues within 4Å: Chain C: H.52, H.54, E.236 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:H.52, C:H.54, C:E.236, C:E.236, H2O.29 ZN.5: 3 residues within 4Å: Chain D: H.52, H.54, E.236 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:H.52, D:H.54, D:E.236, D:E.236, H2O.38

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 1 residues within 4Å: Chain B: D.58 No protein-ligand interaction detected (PLIP) GOL.6: 1 residues within 4Å: Chain D: D.58 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:D.58, D:D.58 Water bridges: D:D.58

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bellinzoni, M. et al., 3-Keto-5-Aminohexanoate Cleavage Enzyme: A Common Fold for an Uncommon Claisen-Type Condensation. J.Biol.Chem. (2011)

Release Date

2011-06-01

Peptides

3-KETO-5-AMINOHEXANOATE CLEAVAGE ENZYME: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

3-KETO-5-AMINOHEXANOATE CLEAVAGE ENZYME

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