SMTL ID : 2y8d.1

STRUCTURE OF DBL6 EPSILON DOMAIN FROM VAR2CSA STRAIN FCR3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

monomer

Ligands

2 x DHL: 2-AMINO-ETHANETHIOL(Non-covalent)

DHL.1: 5 residues within 4Å: Chain A: V.94, Y.155, T.164, E.166, C.168 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.166 DHL.2: 1 residues within 4Å: Chain A: C.58 No protein-ligand interaction detected (PLIP)

1 x BEN: BENZAMIDINE(Non-functional Binders)

BEN.3: 6 residues within 4Å: Chain A: W.33, I.35, L.40, T.233, T.236, E.237 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:T.233, A:T.236 Hydrogen bonds: A:W.33

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gangnard, S. et al., Structural and Immunological Correlations between the Variable Blocks of the Var2Csa Domain Dbl6Epsilon from Two Plasmodium Falciparum Parasite Lines. J.Mol.Biol. (2013)

Release Date

2012-02-15

Peptides

ERYTHROCYTE MEMBRANE PROTEIN 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ERYTHROCYTE MEMBRANE PROTEIN 1