- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.39 Å
- Oligo State
- homo-dimer
- Ligands
- 3 x SO4: SULFATE ION(Non-functional Binders)
- 2 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)
GNP.2: 24 residues within 4Å:- Chain A: E.22, Q.23, S.24, V.25, G.26, K.27, T.28, S.29, F.39, D.40, N.41, Y.43, A.45, T.46, A.71, G.72, N.127, K.128, D.130, L.131, S.157, A.158, K.159
- Ligands: MG.3
29 PLIP interactions:29 interactions with chain A- Hydrogen bonds: A:S.24, A:V.25, A:G.26, A:K.27, A:K.27, A:K.27, A:T.28, A:S.29, A:S.29, A:D.40, A:Q.44, A:T.46, A:T.46, A:G.72, A:N.127, A:K.128, A:K.128, A:A.158, A:K.159
- Water bridges: A:Q.73, A:Q.73, A:K.159, A:K.159, A:K.159, A:K.159
- Salt bridges: A:D.130
- pi-Stacking: A:F.39, A:F.39
- pi-Cation interactions: A:K.128
GNP.6: 24 residues within 4Å:- Chain B: E.22, Q.23, S.24, V.25, G.26, K.27, T.28, S.29, F.39, D.40, N.41, Y.43, A.45, T.46, A.71, G.72, N.127, K.128, D.130, L.131, S.157, A.158, K.159
- Ligands: MG.7
27 PLIP interactions:27 interactions with chain B- Hydrogen bonds: B:S.24, B:V.25, B:G.26, B:K.27, B:K.27, B:T.28, B:T.28, B:S.29, B:S.29, B:D.40, B:Y.43, B:Q.44, B:T.46, B:T.46, B:G.72, B:N.127, B:K.128, B:K.128, B:A.158, B:K.159
- Water bridges: B:T.46, B:Q.73, B:D.95
- Salt bridges: B:D.130
- pi-Stacking: B:F.39, B:F.39
- pi-Cation interactions: B:K.128
- 2 x MG: MAGNESIUM ION(Non-covalent)
MG.3: 3 residues within 4Å:- Chain A: T.28, T.46
- Ligands: GNP.2
4 PLIP interactions:2 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:T.28, A:T.46, H2O.2, H2O.5
MG.7: 3 residues within 4Å:- Chain B: T.28, T.46
- Ligands: GNP.6
4 PLIP interactions:2 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:T.28, B:T.46, H2O.7, H2O.9
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Walden, M. et al., Structure of the Drosophila Melanogaster Rab6 Gtpase at 1.4 A Resolution. Acta Crystallogr.,Sect.F (2011)
- Release Date
- 2011-07-06
- Peptides
- RAB-PROTEIN 6: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.39 Å
- Oligo State
- homo-dimer
- Ligands
- 3 x SO4: SULFATE ION(Non-functional Binders)
- 2 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Walden, M. et al., Structure of the Drosophila Melanogaster Rab6 Gtpase at 1.4 A Resolution. Acta Crystallogr.,Sect.F (2011)
- Release Date
- 2011-07-06
- Peptides
- RAB-PROTEIN 6: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B