SMTL ID : 2y9w.2 (1 other biounit)

Crystal structure of PPO3, a tyrosinase from Agaricus bisporus, in deoxy-form that contains additional unknown lectin-like subunit

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-mer

Ligands

2 x CU: COPPER (II) ION(Non-covalent)

CU.1: 4 residues within 4Å: Chain A: H.60, C.82, H.84, H.93 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.60, A:H.84, A:H.93, H2O.5 CU.2: 4 residues within 4Å: Chain A: H.258, H.262, F.291, H.295 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.258, A:H.262, A:H.295, H2O.5

3 x HO: HOLMIUM ATOM(Non-covalent)

HO.3: 4 residues within 4Å: Chain A: D.335, Q.350, D.352 Ligands: HO.5 Ligand excluded by PLIP HO.4: 3 residues within 4Å: Chain A: E.334, D.352 Ligands: HO.5 Ligand excluded by PLIP HO.5: 5 residues within 4Å: Chain A: E.334, D.335, D.352 Ligands: HO.3, HO.4 Ligand excluded by PLIP

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.6: 5 residues within 4Å: Chain A: E.355, D.356, W.357, E.358, K.378 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.358, A:K.378

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.7: 6 residues within 4Å: Chain B: H.56, N.57, Y.58, K.63, W.72, F.87 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:H.56, B:K.63

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ismaya, W.T. et al., Crystal Structure of Agaricus Bisporus Mushroom Tyrosinase: Identity of the Tetramer Subunits and Interaction with Tropolone. Biochemistry (2011)

Release Date

2011-07-06

Peptides

POLYPHENOL OXIDASE: A
LECTIN-LIKE FOLD PROTEIN: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

POLYPHENOL OXIDASE

LECTIN-LIKE FOLD PROTEIN

Related Entries With Identical Sequence