SMTL ID : 2ya0.1

Catalytic Module of the Multi-modular glycogen-degrading pneumococcal virulence factor SpuA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 3 residues within 4Å: Chain A: S.225, Y.227, D.556 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:S.225, A:Y.227, A:D.556, H2O.13, H2O.26

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: Y.231, F.307, D.553, Y.555 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.553 GOL.3: 5 residues within 4Å: Chain A: T.148, R.149, E.150, S.447, G.449 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.148, A:R.149, A:S.447, A:S.447 GOL.4: 6 residues within 4Å: Chain A: D.49, A.108, N.110, D.113, H.120, L.211 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.49, A:H.120 Water bridges: A:D.49, A:N.110 GOL.5: 4 residues within 4Å: Chain A: S.306, F.307, R.311, M.343 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:F.307, A:R.311, A:R.311 Water bridges: A:T.305

2 x NA: SODIUM ION(Non-functional Binders)

NA.6: 4 residues within 4Å: Chain A: E.416, N.460, L.461, I.466 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.461 Water bridges: A:K.410, A:K.410, A:H.535 NA.7: 5 residues within 4Å: Chain A: A.456, T.462, L.463, H.505, Q.508 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.463 Water bridges: A:T.462, A:R.512

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lammerts Van Bueren, A. et al., The Conformation and Function of a Multimodular Glycogen-Degrading Pneumococcal Virulence Factor. Structure (2011)

Release Date

2011-04-20

Peptides

PUTATIVE ALKALINE AMYLOPULLULANASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PUTATIVE ALKALINE AMYLOPULLULANASE