SMTL ID : 2yaa.1

Crystal structure of the autoinhibited form of mouse DAPK2 in complex with ATP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 13 residues within 4Å: Chain A: L.20, G.21, G.23, Q.24, A.26, V.28, A.41, K.43, E.95, V.97, D.140, I.161, D.162 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:Q.24, A:A.26, A:E.95, A:V.97 Water bridges: A:K.43, A:K.142, A:K.142, A:N.145, A:D.162 Salt bridges: A:K.43, A:K.43 ATP.4: 17 residues within 4Å: Chain B: L.20, G.21, S.22, G.23, F.25, V.28, A.41, K.43, I.78, E.95, L.96, V.97, E.101, N.145, M.147, I.161, D.162 16 PLIP interactions: 16 interactions with chain B Hydrogen bonds: B:E.95, B:V.97, B:E.101, B:D.162, B:D.162 Water bridges: B:Q.24, B:Q.24, B:D.140, B:K.142, B:K.142, B:N.145, B:D.162, B:G.164 Salt bridges: B:K.43, B:K.43, B:K.43

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: S.50, R.51 Chain B: Q.300 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.51 SO4.5: 2 residues within 4Å: Chain A: Q.300 Chain B: R.51 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:Q.300, B:R.51 Water bridges: B:R.51

1 x CA: CALCIUM ION(Non-covalent)

CA.3: 2 residues within 4Å: Chain A: N.191 Chain B: N.191 5 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: A:N.191, B:N.191, H2O.4, H2O.5, H2O.12

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Patel, A.K. et al., Structure of the Dimeric Autoinhibited Conformation of Dapk2, a Pro-Apoptotic Protein Kinase. J.Mol.Biol. (2011)

Release Date

2011-04-13

Peptides

DEATH-ASSOCIATED PROTEIN KINASE 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

DEATH-ASSOCIATED PROTEIN KINASE 2

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