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SMTL ID : 2yaz.1
(1 other biounit)
The Crystal Structure of Leishmania major dUTPase in complex dUMP
Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.40 Å
Oligo State
homo-dimer
Ligands
2 x
UMP
:
2'-DEOXYURIDINE 5'-MONOPHOSPHATE
(Non-covalent)
UMP.1:
16 residues within 4Å:
Chain A:
Q.24
,
L.27
,
N.28
,
I.31
,
W.44
,
D.82
,
H.85
,
F.86
,
K.182
,
N.186
,
R.189
,
Y.194
,
K.201
Chain B:
K.62
,
W.63
,
W.64
17
PLIP interactions
:
14 interactions with chain A
,
3 interactions with chain B
Hydrophobic interactions:
A:I.31
,
A:H.85
,
A:F.86
,
A:F.86
Hydrogen bonds:
A:Q.24
,
A:N.28
,
A:H.85
,
A:K.182
,
A:N.186
,
A:Y.194
Water bridges:
A:R.189
Salt bridges:
A:K.182
,
A:R.189
,
A:K.201
,
B:K.62
pi-Stacking:
B:W.64
,
B:W.64
UMP.5:
15 residues within 4Å:
Chain A:
W.63
,
W.64
Chain B:
Q.24
,
L.27
,
N.28
,
I.31
,
W.44
,
E.51
,
D.82
,
H.85
,
F.86
,
K.182
,
N.186
,
R.189
,
Y.194
15
PLIP interactions
:
12 interactions with chain B
,
3 interactions with chain A
Hydrophobic interactions:
B:I.31
,
B:H.85
,
B:F.86
,
A:W.64
Hydrogen bonds:
B:Q.24
,
B:N.28
,
B:E.51
,
B:H.85
,
B:K.182
,
B:N.186
,
B:Y.194
Salt bridges:
B:K.182
,
B:R.189
,
A:K.62
pi-Stacking:
A:W.64
2 x
SO4
:
SULFATE ION
(Non-functional Binders)
SO4.2:
5 residues within 4Å:
Chain A:
Y.194
,
V.200
,
K.201
,
V.202
Chain B:
K.65
3
PLIP interactions
:
2 interactions with chain A
,
1 interactions with chain B
Hydrogen bonds:
A:K.201
,
A:V.202
Salt bridges:
B:K.65
SO4.4:
4 residues within 4Å:
Chain A:
D.57
,
K.62
,
K.65
,
N.66
3
PLIP interactions
:
3 interactions with chain A
Hydrogen bonds:
A:N.66
Salt bridges:
A:K.62
,
A:K.65
1 x
MG
:
MAGNESIUM ION
(Non-covalent)
MG.3:
3 residues within 4Å:
Chain A:
E.51
,
E.79
,
D.82
4
PLIP interactions
:
4 interactions with chain A
Metal complexes:
A:E.51
,
A:E.79
,
A:E.79
,
A:D.82
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Hemsworth, G.R. et al., The Crystal Structure of the Leishmania Major Deoxyuridine Triphosphate Nucleotidohydrolase in Complex with Nucleotide Analogues, Dump, and Deoxyuridine. J.Biol.Chem. (2011)
Release Date
2011-03-16
Peptides
DUTPASE:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
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Related Entries With Identical Sequence
2yay.1
|
2yaz.2
|
2yb0.1
|
2yb0.2
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