SMTL ID : 2yc1.2 (1 other biounit)

Crystal structure of the human derived single chain antibody fragment (scFv) 9004G in complex with Cn2 toxin from the scorpion Centruroides noxius Hoffmann

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-1-1-1-mer

Ligands

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 3 residues within 4Å: Chain A: S.17, R.19, Q.82 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.17, A:R.19, A:Q.82 Water bridges: A:Q.82 GOL.2: 4 residues within 4Å: Chain B: S.43, R.45, R.107 Ligands: GOL.4 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:S.43, B:S.43, B:R.45, B:R.107, B:R.107 Water bridges: B:S.43 GOL.3: 7 residues within 4Å: Chain B: Q.52, K.54, R.60, P.74, R.76, E.96, D.97 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:Q.52, B:Q.52, B:K.54, B:R.60, B:R.60, B:R.76, B:E.96 Water bridges: B:R.76 GOL.4: 4 residues within 4Å: Chain B: S.43, R.45, G.83 Ligands: GOL.2 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.43, B:S.43, B:R.45 GOL.5: 8 residues within 4Å: Chain C: Y.33, G.34, K.35, G.36, A.37, H.50, L.51, Y.52 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:G.36, C:A.37, C:Y.52

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Canul-Tec, J.C. et al., Structural Basis of Neutralization of the Major Toxic Component from the Scorpion Centruroides Noxius Hoffmann by a Human-Derived Single Chain Antibody Fragment. J.Biol.Chem. (2011)

Release Date

2011-04-13

Peptides

SINGLE CHAIN ANTIBODY FRAGMENT 9004G: A
SINGLE CHAIN ANTIBODY FRAGMENT 9004G: B
BETA-MAMMAL TOXIN CN2: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

C
F

SINGLE CHAIN ANTIBODY FRAGMENT 9004G

SINGLE CHAIN ANTIBODY FRAGMENT 9004G

BETA-MAMMAL TOXIN CN2

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