SMTL ID : 2ycb.1

Structure of the archaeal beta-CASP protein with N-terminal KH domains from Methanothermobacter thermautotrophicus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

homo-dimer

Ligands

5 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: D.246, H.247, D.352, H.603 Ligands: ZN.2, PO4.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.247, A:D.352, A:D.352, A:H.603 ZN.2: 6 residues within 4Å: Chain A: H.242, H.244, H.329, D.352 Ligands: ZN.1, PO4.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.242, A:H.244, A:H.329, A:D.352 ZN.6: 5 residues within 4Å: Chain A: K.464, D.468, H.472 Ligands: PO4.4, PO4.5 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.468 ZN.8: 6 residues within 4Å: Chain B: D.246, H.247, D.352, H.603 Ligands: ZN.9, PO4.10 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.246, B:H.247, B:D.352, B:D.352, B:H.603 ZN.9: 6 residues within 4Å: Chain B: H.242, H.244, H.329, D.352 Ligands: ZN.8, PO4.10 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.242, B:H.244, B:H.329, B:D.352

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 10 residues within 4Å: Chain A: H.242, H.244, D.246, H.247, H.329, D.352, H.579, H.603 Ligands: ZN.1, ZN.2 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:D.246 Salt bridges: A:H.242, A:H.244, A:H.247, A:H.329, A:H.579, A:H.603 PO4.4: 6 residues within 4Å: Chain A: R.135, R.467, D.468, H.472 Ligands: PO4.5, ZN.6 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:R.135, A:R.467, A:H.472 PO4.5: 5 residues within 4Å: Chain A: K.464, R.467, D.468 Ligands: PO4.4, ZN.6 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.464, A:R.467 PO4.10: 10 residues within 4Å: Chain B: H.242, H.244, D.246, H.247, H.329, D.352, H.579, H.603 Ligands: ZN.8, ZN.9 6 PLIP interactions: 6 interactions with chain B Salt bridges: B:H.242, B:H.244, B:H.247, B:H.329, B:H.579, B:H.603

2 x K: POTASSIUM ION(Non-covalent)

K.7: 3 residues within 4Å: Chain A: L.225, V.227, F.230 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:V.227, A:F.230 K.11: 3 residues within 4Å: Chain B: L.225, V.227, F.230 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:F.230

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Silva, A.P.G. et al., Structure and Activity of a Novel Archaeal Beta-Casp Protein with N-Terminal Kh Domains. Structure (2011)

Release Date

2011-05-25

Peptides

CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR