SMTL ID : 2ycd.1

Structure of a novel Glutathione Transferase from Agrobacterium tumefaciens.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

homo-dimer

Ligands

2 x GTB: S-(P-NITROBENZYL)GLUTATHIONE(Non-covalent)

GTB.1: 15 residues within 4Å: Chain A: F.22, P.26, D.27, L.32, A.33, R.34, M.59, Q.72, I.73, P.74, E.85, S.86, R.187 Chain B: N.120, T.121 14 PLIP interactions: 10 interactions with chain A, 4 interactions with chain B Hydrophobic interactions: A:P.26 Hydrogen bonds: A:Q.72, A:I.73, A:I.73, A:E.85, A:E.85, A:S.86, B:N.120 Water bridges: A:R.34, A:G.87, B:R.156, B:R.156, B:R.156 Salt bridges: A:R.34 GTB.3: 15 residues within 4Å: Chain A: N.120, T.121 Chain B: F.22, P.26, D.27, L.32, A.33, R.34, M.59, Q.72, I.73, P.74, E.85, S.86, R.187 16 PLIP interactions: 11 interactions with chain B, 5 interactions with chain A Hydrophobic interactions: B:P.26 Hydrogen bonds: B:Q.72, B:I.73, B:I.73, B:E.85, B:E.85, B:S.86, A:N.120, A:T.121 Water bridges: B:R.34, B:E.85, B:G.87, A:R.156, A:R.156, A:R.156 Salt bridges: B:R.34

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 1 residues within 4Å: Chain A: R.210 5 PLIP interactions: 5 interactions with chain A Water bridges: A:R.210, A:R.210, A:R.210, A:R.210 Salt bridges: A:R.210 PO4.4: 1 residues within 4Å: Chain B: R.210 5 PLIP interactions: 5 interactions with chain B Water bridges: B:R.210, B:R.210, B:R.210, B:R.210 Salt bridges: B:R.210

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Skopelitou, K. et al., A Glutathione Transferase from Agrobacterium Tumefaciens Reveals a Novel Class of Bacterial Gst Superfamily. Plos One (2012)

Release Date

2012-03-28

Peptides

GLUTATHIONE S-TRANSFERASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

GLUTATHIONE S-TRANSFERASE