SMTL ID : 2yce.2 (1 other biounit)

Structure of an Archaeal fructose-1,6-bisphosphate aldolase with the catalytic Lys covalently bound to the carbinolamine intermediate of the substrate.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.93 Å

Oligo State

homo-pentamer

Ligands

5 x M2P: D-MANNITOL-1,6-DIPHOSPHATE(Covalent)

M2P.1: 17 residues within 4Å: Chain A: A.22, D.24, H.25, E.28, H.29, W.144, F.146, R.148, K.177, K.179, S.202, G.203, G.204, A.229, V.230, G.231, R.232 21 PLIP interactions: 21 interactions with chain A Hydrogen bonds: A:D.24, A:H.29, A:G.203, A:G.204, A:G.204, A:G.204, A:G.231, A:R.232 Water bridges: A:E.28, A:E.28, A:K.78, A:K.78, A:R.148, A:R.232, A:N.233 Salt bridges: A:H.25, A:H.29, A:R.148, A:K.177, A:K.179, A:R.232 M2P.2: 17 residues within 4Å: Chain B: A.22, D.24, H.25, E.28, H.29, W.144, F.146, R.148, K.177, K.179, S.202, G.203, G.204, A.229, V.230, G.231, R.232 21 PLIP interactions: 21 interactions with chain B Hydrogen bonds: B:D.24, B:H.29, B:G.203, B:G.204, B:G.204, B:G.204, B:G.231, B:R.232, B:R.232 Water bridges: B:K.78, B:K.78, B:K.82, B:R.148, B:R.148, B:N.233 Salt bridges: B:H.25, B:H.29, B:R.148, B:K.177, B:K.179, B:R.232 M2P.3: 17 residues within 4Å: Chain C: A.22, D.24, H.25, E.28, H.29, W.144, F.146, R.148, K.177, K.179, S.202, G.203, G.204, A.229, V.230, G.231, R.232 22 PLIP interactions: 22 interactions with chain C Hydrogen bonds: C:D.24, C:H.29, C:G.203, C:G.204, C:G.204, C:G.204, C:G.231, C:R.232, C:R.232 Water bridges: C:E.28, C:K.78, C:K.78, C:K.82, C:R.148, C:K.179, C:N.233 Salt bridges: C:H.25, C:H.29, C:R.148, C:K.177, C:K.179, C:R.232 M2P.4: 17 residues within 4Å: Chain D: A.22, D.24, H.25, E.28, H.29, W.144, F.146, R.148, K.177, K.179, S.202, G.203, G.204, A.229, V.230, G.231, R.232 21 PLIP interactions: 21 interactions with chain D Hydrogen bonds: D:D.24, D:H.29, D:G.203, D:G.204, D:G.204, D:G.204, D:G.231, D:R.232 Water bridges: D:E.28, D:H.29, D:K.78, D:K.78, D:R.148, D:K.179, D:N.233 Salt bridges: D:H.25, D:H.29, D:R.148, D:K.177, D:K.179, D:R.232 M2P.5: 17 residues within 4Å: Chain E: A.22, D.24, H.25, E.28, H.29, W.144, F.146, R.148, K.177, K.179, S.202, G.203, G.204, A.229, V.230, G.231, R.232 21 PLIP interactions: 21 interactions with chain E Hydrogen bonds: E:D.24, E:H.29, E:G.203, E:G.204, E:G.204, E:G.204, E:G.231, E:R.232 Water bridges: E:K.78, E:K.78, E:R.148, E:R.148, E:K.179, E:R.232, E:N.233 Salt bridges: E:H.25, E:H.29, E:R.148, E:K.177, E:K.179, E:R.232

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lorentzen, E. et al., Mechanism of the Schiff Base Forming Fructose-1,6-Bisphosphate Aldolase: Structural Analysis of Reaction Intermediates. Biochemistry (2005)

Release Date

2011-04-27

Peptides

FRUCTOSE-BISPHOSPHATE ALDOLASE CLASS 1: ABCDE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

B
G

C
H

D
I

E
J

FRUCTOSE-BISPHOSPHATE ALDOLASE CLASS 1

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