- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x P61: (2E)-3-(3-fluoro-4-hydroxyphenyl)-2-{[(Z)-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4(1H)-ylidene}methyl]imino}propanoic acid(Non-covalent)
- 13 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
PGE.2: 7 residues within 4Å:- Chain A: V.138, D.139, K.162, K.165, L.166, E.169, K.170
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:D.139
PGE.3: 4 residues within 4Å:- Chain A: K.226, E.227, E.233, Y.312
1 PLIP interactions:1 interactions with chain A- Water bridges: A:K.226
PGE.4: 6 residues within 4Å:- Chain A: Q.311, E.313
- Chain D: V.16, S.17, M.18, Y.44
2 PLIP interactions:1 interactions with chain D, 1 interactions with chain A- Water bridges: D:M.18, A:Q.311
PGE.6: 4 residues within 4Å:- Chain A: R.388, E.442, K.444
- Ligands: PG4.5
No protein-ligand interaction detected (PLIP)PGE.12: 4 residues within 4Å:- Chain B: K.226, E.233, Y.312, E.313
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:K.226
- Water bridges: B:K.226, B:K.226
PGE.15: 7 residues within 4Å:- Chain B: K.59, A.62, M.66, I.304
- Chain D: K.59, M.66, I.304
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:K.59
PGE.19: 6 residues within 4Å:- Chain B: Q.311, E.313
- Chain C: V.16, S.17, M.18, Y.44
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:M.18
- Water bridges: C:S.17, C:S.17
PGE.20: 7 residues within 4Å:- Chain C: V.138, D.139, K.162, K.165, L.166, E.169, K.170
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:D.139, C:E.169
PGE.21: 3 residues within 4Å:- Chain C: K.226, E.233, Y.312
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:K.226
- Water bridges: C:E.227
PGE.22: 4 residues within 4Å:- Chain C: K.444
- Chain D: S.277, E.280
- Ligands: PEG.23
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:K.444
- Water bridges: C:K.444, C:K.444
PGE.28: 8 residues within 4Å:- Chain D: Y.116, V.138, D.139, K.162, K.165, L.166, E.169, K.170
1 PLIP interactions:1 interactions with chain D- Water bridges: D:D.139
PGE.29: 3 residues within 4Å:- Chain D: K.226, E.233, Y.312
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:K.226, D:K.226
- Water bridges: D:Y.312
PGE.31: 3 residues within 4Å:- Chain D: E.442, K.444
- Ligands: PG4.30
No protein-ligand interaction detected (PLIP)- 5 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
PG4.5: 4 residues within 4Å:- Chain A: K.444
- Chain B: S.277, E.280
- Ligands: PGE.6
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:K.444
PG4.9: 7 residues within 4Å:- Chain A: V.16, S.17, M.18, Y.44
- Chain D: P.7, Q.311, E.313
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain D- Hydrogen bonds: A:M.18
- Water bridges: A:M.18, D:Q.311
PG4.11: 6 residues within 4Å:- Chain B: V.138, D.139, K.162, L.166, E.169, K.170
1 PLIP interactions:1 interactions with chain B- Water bridges: B:K.162
PG4.13: 4 residues within 4Å:- Chain A: S.277, E.280
- Chain B: K.444
- Ligands: EDO.14
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:K.444
- Water bridges: B:K.444
PG4.30: 4 residues within 4Å:- Chain C: S.277, E.280
- Chain D: K.444
- Ligands: PGE.31
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:K.444
- 4 x K: POTASSIUM ION(Non-covalent)
K.7: 3 residues within 4Å:- Chain A: G.52, N.262
- Chain B: E.69
5 PLIP interactions:1 interactions with chain B, 2 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: B:E.69, A:G.52, A:N.262, H2O.4, H2O.31
K.8: 3 residues within 4Å:- Chain A: E.69
- Chain B: G.52, N.262
5 PLIP interactions:2 interactions with chain B, 1 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: B:G.52, B:N.262, A:E.69, H2O.13, H2O.23
K.24: 3 residues within 4Å:- Chain C: G.52, N.262
- Chain D: E.69
5 PLIP interactions:1 interactions with chain D, 2 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: D:E.69, C:G.52, C:N.262, H2O.59, H2O.67
K.25: 3 residues within 4Å:- Chain C: E.69
- Chain D: G.52, N.262
5 PLIP interactions:2 interactions with chain D, 1 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: D:G.52, D:N.262, C:E.69, H2O.49, H2O.58
- 1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 1 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
- 2 x P33: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL(Non-covalent)
P33.18: 13 residues within 4Å:- Chain B: M.1, Y.3, Y.324, Y.414, A.415, D.418, V.419
- Chain C: M.1, Y.3, Y.324, Y.414, A.415, D.418
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:Y.324
- Water bridges: C:D.418, C:D.418
P33.27: 12 residues within 4Å:- Chain A: M.1, Y.3, Y.324, Y.414, A.415, V.419
- Chain D: M.1, Y.3, Y.324, Y.414, A.415, D.418
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Y.324
- Water bridges: A:D.418, A:D.418
- 2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Milic, D. et al., Crystallographic Snapshots of Tyrosine Phenol-Lyase Show that Substrate Strain Plays a Role in C-C Bond Cleavage. J.Am.Chem.Soc. (2011)
- Release Date
- 2011-09-14
- Peptides
- TYROSINE PHENOL-LYASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x P61: (2E)-3-(3-fluoro-4-hydroxyphenyl)-2-{[(Z)-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4(1H)-ylidene}methyl]imino}propanoic acid(Non-covalent)
- 13 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- 5 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
- 4 x K: POTASSIUM ION(Non-covalent)
- 1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 1 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
- 2 x P33: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL(Non-covalent)
- 2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Milic, D. et al., Crystallographic Snapshots of Tyrosine Phenol-Lyase Show that Substrate Strain Plays a Role in C-C Bond Cleavage. J.Am.Chem.Soc. (2011)
- Release Date
- 2011-09-14
- Peptides
- TYROSINE PHENOL-LYASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D