SMTL ID : 2ydk.1

Discovery of Checkpoint Kinase Inhibitor AZD7762 by Structure Based Design and Optimization of Thiophene Carboxamide Ureas

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: R.129, T.153, R.162, K.166 8 PLIP interactions: 8 interactions with chain A Water bridges: A:R.129, A:T.153, A:T.153, A:K.166, A:K.166 Salt bridges: A:R.129, A:R.162, A:K.166

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 2 residues within 4Å: Chain A: R.74, R.75 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.75 Water bridges: A:R.74, A:R.75 GOL.3: 2 residues within 4Å: Chain A: D.10, V.12 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.10 GOL.4: 2 residues within 4Å: Chain A: E.33, Y.71 No protein-ligand interaction detected (PLIP) GOL.5: 4 residues within 4Å: Chain A: F.155, R.156, E.161, E.187 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.156, A:E.187 GOL.6: 8 residues within 4Å: Chain A: F.93, I.96, P.98, Y.173, A.200, G.204, E.205, L.206 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.173, A:Y.173, A:G.204, A:L.206

1 x YDK: 2-(CARBAMOYLAMINO)-5-PHENYL-N-[(3S)-PIPERIDIN-3-YL]THIOPHENE-3-CARBOXAMIDE(Non-covalent)

YDK.7: 16 residues within 4Å: Chain A: L.15, E.17, V.23, A.36, V.68, L.84, E.85, Y.86, C.87, S.88, G.90, E.91, E.134, N.135, L.137, D.148 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.15, A:L.15, A:Y.86, A:L.137 Hydrogen bonds: A:E.85, A:C.87, A:D.148 Water bridges: A:L.15, A:E.91, A:S.147

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Oza, V. et al., Discovery of Checkpoint Kinase Inhibitor (S)-5-(3-Fluorophenyl)-N-(Piperidin-3-Yl)-3-Ureidothiophene-2-Carboxamide (Azd7762) by Structure-Based Design and Optimization of Thiophenecarboxamide Ureas. J.Med.Chem. (2012)

Release Date

2012-04-04

Peptides

SERINE/THREONINE-PROTEIN KINASE CHK1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

SERINE/THREONINE-PROTEIN KINASE CHK1

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