- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.45 Å
- Oligo State
- homo-tetramer
- Ligands
- 8 x GOL: GLYCEROL(Non-functional Binders)
- 4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.3: 3 residues within 4Å:- Chain A: P.27, A.62, D.65
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:D.65
EDO.9: 3 residues within 4Å:- Chain B: P.27, A.62, D.65
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:D.65, B:D.65
EDO.15: 3 residues within 4Å:- Chain C: P.27, A.62, D.65
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:D.65, C:D.65
EDO.21: 3 residues within 4Å:- Chain D: P.27, A.62, D.65
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:D.65
- 4 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.4: 4 residues within 4Å:- Chain A: R.111, Y.115, R.116, R.164
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:R.116, A:R.116
- Water bridges: A:R.111, A:R.111
- Salt bridges: A:R.111, A:R.164
PO4.10: 4 residues within 4Å:- Chain B: R.111, Y.115, R.116, R.164
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:R.116, B:R.116
- Water bridges: B:R.111, B:R.111
- Salt bridges: B:R.111, B:R.164
PO4.16: 4 residues within 4Å:- Chain C: R.111, Y.115, R.116, R.164
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:R.116, C:R.116
- Water bridges: C:R.111, C:R.111
- Salt bridges: C:R.111, C:R.164
PO4.22: 4 residues within 4Å:- Chain D: R.111, Y.115, R.116, R.164
6 PLIP interactions:6 interactions with chain D- Hydrogen bonds: D:R.116, D:R.116
- Water bridges: D:R.111, D:R.111
- Salt bridges: D:R.111, D:R.164
- 8 x MG: MAGNESIUM ION(Non-covalent)
MG.5: 4 residues within 4Å:- Chain A: E.176, E.277, F.280, S.281
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:E.176, A:E.176, A:E.277, A:F.280, H2O.513
MG.6: 1 residues within 4Å:- Chain A: E.277
6 PLIP interactions:1 interactions with chain A, 5 Ligand-Water interactions- Metal complexes: A:E.277, H2O.177, H2O.511, H2O.519, H2O.521, H2O.527
MG.11: 4 residues within 4Å:- Chain B: E.176, E.277, F.280, S.281
5 PLIP interactions:4 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:E.176, B:E.176, B:E.277, B:F.280, H2O.1571
MG.12: 1 residues within 4Å:- Chain B: E.277
6 PLIP interactions:1 interactions with chain B, 5 Ligand-Water interactions- Metal complexes: B:E.277, H2O.1235, H2O.1569, H2O.1577, H2O.1579, H2O.1585
MG.17: 4 residues within 4Å:- Chain C: E.176, E.277, F.280, S.281
5 PLIP interactions:4 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:E.176, C:E.176, C:E.277, C:F.280, H2O.2629
MG.18: 1 residues within 4Å:- Chain C: E.277
6 PLIP interactions:1 interactions with chain C, 5 Ligand-Water interactions- Metal complexes: C:E.277, H2O.2293, H2O.2627, H2O.2635, H2O.2637, H2O.2643
MG.23: 4 residues within 4Å:- Chain D: E.176, E.277, F.280, S.281
5 PLIP interactions:4 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:E.176, D:E.176, D:E.277, D:F.280, H2O.3687
MG.24: 1 residues within 4Å:- Chain D: E.277
6 PLIP interactions:1 interactions with chain D, 5 Ligand-Water interactions- Metal complexes: D:E.277, H2O.3351, H2O.3685, H2O.3693, H2O.3695, H2O.3701
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bruel, L. et al., Agask, a Bifunctional Enzyme from the Human Microbiome Coupling Galactosidase and Kinase Activities. J.Biol.Chem. (2011)
- Release Date
- 2011-09-28
- Peptides
- ALPHA-GALACTOSIDASE-SUCROSE KINASE AGASK: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.45 Å
- Oligo State
- homo-tetramer
- Ligands
- 8 x GOL: GLYCEROL(Non-functional Binders)
- 4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 4 x PO4: PHOSPHATE ION(Non-functional Binders)
- 8 x MG: MAGNESIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bruel, L. et al., Agask, a Bifunctional Enzyme from the Human Microbiome Coupling Galactosidase and Kinase Activities. J.Biol.Chem. (2011)
- Release Date
- 2011-09-28
- Peptides
- ALPHA-GALACTOSIDASE-SUCROSE KINASE AGASK: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A