SMTL ID : 2yfq.1

Crystal structure of Glutamate dehydrogenase from Peptoniphilus asaccharolyticus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.94 Å

Oligo State

homo-hexamer

Ligands

12 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: K.70, G.71, G.72, M.91, A.144, V.352, S.355 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.355 Salt bridges: A:K.70 SO4.2: 3 residues within 4Å: Chain A: P.178, V.179, R.187 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.179 Salt bridges: A:R.187 SO4.3: 3 residues within 4Å: Chain B: P.178, V.179, R.187 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:V.179 Salt bridges: B:R.187 SO4.4: 7 residues within 4Å: Chain B: K.70, G.71, G.72, M.91, A.144, V.352, S.355 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.355 Salt bridges: B:K.70 SO4.5: 7 residues within 4Å: Chain C: K.70, G.71, G.72, M.91, A.144, V.352, S.355 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:S.355 Salt bridges: C:K.70 SO4.6: 3 residues within 4Å: Chain C: P.178, V.179, R.187 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:V.179 Salt bridges: C:R.187 SO4.7: 3 residues within 4Å: Chain D: P.178, V.179, R.187 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:V.179 Salt bridges: D:R.187 SO4.8: 7 residues within 4Å: Chain D: K.70, G.71, G.72, M.91, A.144, V.352, S.355 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:S.355 Salt bridges: D:K.70 SO4.9: 7 residues within 4Å: Chain E: K.70, G.71, G.72, M.91, A.144, V.352, S.355 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:S.355 Salt bridges: E:K.70 SO4.10: 3 residues within 4Å: Chain E: P.178, V.179, R.187 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:V.179 Salt bridges: E:R.187 SO4.11: 3 residues within 4Å: Chain F: P.178, V.179, R.187 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:V.179 Salt bridges: F:R.187 SO4.12: 7 residues within 4Å: Chain F: K.70, G.71, G.72, M.91, A.144, V.352, S.355 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:S.355 Salt bridges: F:K.70

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Oliveira, T. et al., Crystal Structure of Nad-Dependent Peptoniphilus Asaccharolyticus Glutamate Dehydrogenase Reveals Determinants of Cofactor Specificity. J.Struct.Biol. (2012)

Release Date

2011-11-23

Peptides

NAD-SPECIFIC GLUTAMATE DEHYDROGENASE: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

NAD-SPECIFIC GLUTAMATE DEHYDROGENASE