SMTL ID : 2yfs.1 (1 other biounit)

Crystal structure of inulosucrase from Lactobacillus johnsonii NCC533 in complex with sucrose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

2 x GLC- FRU: beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose(Non-covalent)

GLC-FRU.1: 15 residues within 4Å: Chain A: W.128, N.129, M.153, W.196, S.197, R.281, D.282, E.298, E.379, E.381, R.399, R.402, Y.457, S.458, R.480 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.129, A:S.197, A:D.282, A:E.381, A:S.458, A:R.281, A:E.379, A:E.381, A:R.399, A:R.402 Water bridges: A:N.162, A:R.399, A:R.480, A:R.480, A:R.480 GLC-FRU.2: 5 residues within 4Å: Chain A: N.158, V.159, N.160, N.162, R.480 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.158, A:V.159, A:N.160, A:N.162, A:N.162, A:R.480, A:N.158 Water bridges: A:R.480

2 x CA: CALCIUM ION(Non-covalent)

CA.3: 5 residues within 4Å: Chain A: D.276, Q.307, W.344, N.346, D.378 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.276, A:W.344, A:D.378 CA.4: 5 residues within 4Å: Chain A: G.172, N.174, D.517, I.519, S.524 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.517, A:I.519, A:S.524, H2O.2, H2O.4

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 1 residues within 4Å: Chain A: R.95 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.95 SO4.6: 3 residues within 4Å: Chain A: K.535, P.544, G.545 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.545 Salt bridges: A:K.535 SO4.7: 2 residues within 4Å: Chain A: K.121, V.122 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.122, A:V.122 SO4.8: 4 residues within 4Å: Chain A: E.482, K.486, G.487, H.489 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.482, A:G.487 Salt bridges: A:K.486, A:H.489

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pijning, T. et al., Crystal Structure of Inulosucrase from Lactobacillus: Insights Into the Substrate Specificity and Product Specificity of Gh68 Fructansucrases. J.Mol.Biol. (2011)

Release Date

2011-08-03

Peptides

LEVANSUCRASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

LEVANSUCRASE

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