SMTL ID : 2yg2.1 (1 other biounit)

Structure of apolioprotein M in complex with Sphingosine 1-Phosphate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x S1P: (2S,3R,4E)-2-amino-3-hydroxyoctadec-4-en-1-yl dihydrogen phosphate(Non-covalent)

S1P.1: 19 residues within 4Å: Chain A: F.23, H.27, W.31, F.47, F.55, L.68, R.82, W.84, Y.86, L.95, R.100, M.103, L.107, I.116, L.118, E.120, R.127, Y.131 Ligands: FLC.2 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:F.23, A:H.27, A:W.31, A:F.55, A:L.68, A:Y.86, A:L.95, A:L.107, A:I.116, A:Y.131, A:Y.131, A:Y.131 Hydrogen bonds: A:E.120 Water bridges: A:R.82, A:R.100, A:R.100, A:R.100, A:R.127, A:R.127, A:Y.131 Salt bridges: A:R.82, A:R.100

1 x FLC: CITRATE ANION(Non-covalent)

FLC.2: 5 residues within 4Å: Chain A: R.100, D.102, M.103, Y.125 Ligands: S1P.1 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Y.125 Water bridges: A:R.127, A:R.127, A:R.127, A:R.127 Salt bridges: A:R.100

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Christoffersen, C. et al., Endothelium-Protective Sphingosine-1-Phosphate Provided by Hdl-Associated Apolipoprotein M. Proc.Natl.Acad.Sci.USA (2011)

Release Date

2011-06-01

Peptides

APOLIPOPROTEIN M: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

APOLIPOPROTEIN M

Related Entries With Identical Sequence