SMTL ID : 2ygy.1

Structure of wild type E. coli N-acetylneuraminic acid lyase in space group P21 crystal form II

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-tetramer

Ligands

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 7 residues within 4Å: Chain A: A.18, Y.50, G.53, S.54, T.55, Y.144, K.172 Ligand excluded by PLIP CL.2: 6 residues within 4Å: Chain B: A.18, Y.50, G.53, S.54, T.55, K.172 Ligand excluded by PLIP CL.4: 6 residues within 4Å: Chain C: A.18, Y.50, G.53, S.54, T.55, K.172 Ligand excluded by PLIP CL.6: 6 residues within 4Å: Chain D: A.18, Y.50, G.53, S.54, T.55, K.172 Ligand excluded by PLIP

2 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.3: 3 residues within 4Å: Chain B: K.78, G.79, K.80 1 PLIP interactions: 1 interactions with chain B Water bridges: B:G.79 1PE.5: 6 residues within 4Å: Chain C: R.36, H.267, D.270, V.271, V.272, S.273 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:D.270

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Campeotto, I. et al., Pathological macromolecular crystallographic data affected by twinning, partial-disorder and exhibiting multiple lattices for testing of data processing and refinement tools. Sci Rep (2018)

Release Date

2012-04-04

Peptides

N-ACETYLNEURAMINATE LYASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

N-ACETYLNEURAMINATE LYASE

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