SMTL ID : 2yha.1

Crystal Structure of the N. crassa QDE-2 AGO MID-PIWI Domains

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 8 residues within 4Å: Chain A: Y.94, K.98, T.109, V.110, C.111, K.133, K.137, I.388 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:Y.94, A:C.111 Water bridges: A:K.133, A:K.137, A:I.388 Salt bridges: A:K.98, A:K.133, A:K.137

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: K.23, S.58, M.59, S.60 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.23, A:S.60, A:S.60

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Boland, A. et al., Crystal Structure of the Mid-Piwi Lobe of a Eukaryotic Argonaute Protein. Proc.Natl.Acad.Sci.USA (2011)

Release Date

2011-06-15

Peptides

POST-TRANSCRIPTIONAL GENE SILENCING PROTEIN QDE-2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

POST-TRANSCRIPTIONAL GENE SILENCING PROTEIN QDE-2