- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.05 Å
- Oligo State
- homo-12-mer
- Ligands
- 2 x FE: FE (III) ION(Non-covalent)
- 10 x OFE: IRON(II) OXIDE(Non-covalent)(Covalent)
OFE.2: 5 residues within 4Å:- Chain A: K.40, H.43, D.59
- Chain B: D.70, E.74
6 PLIP interactions:3 interactions with chain B, 2 interactions with chain A, 1 Ligand-Ligand interactions- Metal complexes: B:D.70, B:D.70, B:E.74, A:H.43, OFE.2
- Hydrogen bonds: A:D.59
OFE.3: 5 residues within 4Å:- Chain C: D.70, E.74
- Chain I: H.43, H.55, D.59
5 PLIP interactions:3 interactions with chain C, 1 interactions with chain I, 1 Ligand-Ligand interactions- Hydrogen bonds: C:E.74
- Metal complexes: C:D.70, C:E.74, I:H.43, OFE.3
OFE.4: 5 residues within 4Å:- Chain D: D.70, E.74
- Chain J: K.40, H.43, D.59
6 PLIP interactions:3 interactions with chain D, 1 interactions with chain J, 1 Ligand-Ligand interactions, 1 Ligand-Water interactions- Hydrogen bonds: D:D.70
- Metal complexes: D:D.70, D:E.74, J:H.43, OFE.4, H2O.265
OFE.5: 5 residues within 4Å:- Chain E: K.40, H.43, D.59
- Chain F: D.70, E.74
6 PLIP interactions:2 interactions with chain F, 2 interactions with chain E, 1 Ligand-Ligand interactions, 1 Ligand-Water interactions- Metal complexes: F:D.70, F:E.74, E:H.43, OFE.5, H2O.330
- Hydrogen bonds: E:D.59
OFE.6: 5 residues within 4Å:- Chain E: D.70, E.74
- Chain F: K.40, H.43, D.59
6 PLIP interactions:2 interactions with chain E, 2 interactions with chain F, 1 Ligand-Ligand interactions, 1 Ligand-Water interactions- Metal complexes: E:D.70, E:E.74, F:H.43, OFE.6, H2O.340
- Hydrogen bonds: F:D.59
OFE.7: 5 residues within 4Å:- Chain G: D.70, E.74
- Chain H: K.40, H.43, D.59
6 PLIP interactions:2 interactions with chain H, 2 interactions with chain G, 1 Ligand-Ligand interactions, 1 Ligand-Water interactions- Hydrogen bonds: H:D.59
- Metal complexes: H:H.43, G:D.70, G:E.74, OFE.7, H2O.505
OFE.8: 4 residues within 4Å:- Chain G: H.43, H.55
- Chain H: D.70, E.74
6 PLIP interactions:1 interactions with chain G, 4 interactions with chain H, 1 Ligand-Ligand interactions- Metal complexes: G:H.43, H:D.70, H:D.70, H:E.74, OFE.8
- Hydrogen bonds: H:E.74
OFE.9: 5 residues within 4Å:- Chain C: K.40, H.43, D.59
- Chain I: D.70, E.74
7 PLIP interactions:3 interactions with chain C, 2 interactions with chain I, 1 Ligand-Water interactions, 1 Ligand-Ligand interactions- Hydrogen bonds: C:K.40
- Water bridges: C:K.40
- Metal complexes: C:H.43, I:D.70, I:E.74, H2O.1, OFE.9
OFE.10: 5 residues within 4Å:- Chain D: K.40, H.43, D.59
- Chain J: D.70, E.74
7 PLIP interactions:3 interactions with chain D, 2 interactions with chain J, 1 Ligand-Ligand interactions, 1 Ligand-Water interactions- Hydrogen bonds: D:D.59
- Water bridges: D:K.40
- Metal complexes: D:H.43, J:D.70, J:E.74, OFE.10, H2O.250
OFE.12: 5 residues within 4Å:- Chain K: D.70, E.74
- Chain L: K.40, H.43, D.59
6 PLIP interactions:2 interactions with chain K, 2 interactions with chain L, 1 Ligand-Ligand interactions, 1 Ligand-Water interactions- Metal complexes: K:D.70, K:E.74, L:H.43, OFE.12, H2O.813
- Hydrogen bonds: L:D.59
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Pesek, J. et al., Structure and Mechanism of Iron Translocation by a Dps Protein from Microbacterium Arborescens. J.Biol.Chem. (2011)
- Release Date
- 2011-06-29
- Peptides
- AFP: ABCDEFGHIJKL
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
IJ
JK
KL
L
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.05 Å
- Oligo State
- homo-12-mer
- Ligands
- 2 x FE: FE (III) ION(Non-covalent)
- 10 x OFE: IRON(II) OXIDE(Non-covalent)(Covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Pesek, J. et al., Structure and Mechanism of Iron Translocation by a Dps Protein from Microbacterium Arborescens. J.Biol.Chem. (2011)
- Release Date
- 2011-06-29
- Peptides
- AFP: ABCDEFGHIJKL
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
IJ
JK
KL
L