SMTL ID : 2yjq.1 (1 other biounit)

Structure of a Paenibacillus Polymyxa Xyloglucanase from Glycoside Hydrolase Family 44

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

monomer

Ligands

1 x BGC- BGC: beta-D-glucopyranose-(1-4)-beta-D-glucopyranose(Non-covalent)

BGC-BGC.1: 9 residues within 4Å: Chain A: G.47, N.48, R.49, A.62, D.65, W.66, Y.73, W.391 Ligands: OXZ.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.49, A:R.49, A:R.49

1 x OXZ: TETRAHYDROOXAZINE(Non-covalent)

OXZ.2: 8 residues within 4Å: Chain A: G.47, N.48, E.187, Y.286, W.391, L.393 Ligands: BGC-BGC.1, EDO.5 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:N.48, A:Y.286, A:Y.286 Water bridges: A:N.48, A:N.48, A:N.48, A:N.48, A:S.358

1 x CA: CALCIUM ION(Non-covalent)

CA.3: 4 residues within 4Å: Chain A: E.56, D.151, D.154, Y.156 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.56, A:D.151, A:D.154, A:Y.156, H2O.2

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 6 residues within 4Å: Chain A: N.72, C.75, S.76, L.80, T.81, Q.82 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.72, A:L.80 EDO.5: 4 residues within 4Å: Chain A: Y.286, R.295, T.297 Ligands: OXZ.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.295, A:R.295, A:T.297 Water bridges: A:Y.286 EDO.6: 6 residues within 4Å: Chain A: L.34, A.35, V.397, N.398, N.399, S.402 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.398, A:S.402 Water bridges: A:E.38 EDO.7: 4 residues within 4Å: Chain A: F.146, Q.147, L.148, Q.149 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.146, A:L.148, A:Q.149 EDO.11: 4 residues within 4Å: Chain A: Y.234, Q.243, W.326 Ligands: PGE.10 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.243

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.8: 6 residues within 4Å: Chain A: E.187, P.188, A.189, L.233, Y.234, A.238 Ligand excluded by PLIP

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.9: 2 residues within 4Å: Chain A: P.25, R.409 2 PLIP interactions: 2 interactions with chain A Water bridges: A:T.417 Salt bridges: A:R.409

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.10: 4 residues within 4Å: Chain A: H.193, Y.234, Q.243 Ligands: EDO.11 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.193, A:Q.243

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ariza, A. et al., Structure and Activity of Paenibacillus Polymyxa Xyloglucanase from Glycoside Hydrolase Family 44. J.Biol.Chem. (2011)

Release Date

2011-06-15

Peptides

CEL44C: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CEL44C

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