SMTL ID : 2yk0.1

Structure of the N-terminal NTS-DBL1-alpha and CIDR-gamma double domain of the PfEMP1 protein from Plasmodium falciparum varO strain.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: S.118, I.121, N.124, E.125 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:S.118, A:N.124, A:E.125, A:E.125 MG.2: 2 residues within 4Å: Chain A: E.534, S.535 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.534, A:S.535

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: L.538, K.540, K.592, K.596 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.538 Salt bridges: A:K.540, A:K.592, A:K.596 SO4.4: 1 residues within 4Å: Chain A: G.246 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.246

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vigan-Womas, I. et al., Structural Basis for the Abo Blood-Group Dependence of Plasmodium Falciparum Rosetting. Plos Pathog. (2012)

Release Date

2012-05-30

Peptides

ERYTHROCYTE MEMBRANE PROTEIN 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ERYTHROCYTE MEMBRANE PROTEIN 1