SMTL ID : 2ykl.1

Structure of human anti-nicotine Fab fragment in complex with nicotine-11-yl-methyl-(4-ethylamino-4-oxo)-butanoate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NLD: NICOTINE-11-YL-METHYL-(4-ETHYLAMINO-4-OXO)-BUTANOATE(Non-covalent)

NLD.1: 10 residues within 4Å: Chain A: I.29, W.30, G.31, S.46, V.92, W.94, E.105 Chain B: Y.35, Y.37, W.99 8 PLIP interactions: 4 interactions with chain B, 4 interactions with chain A Hydrophobic interactions: B:Y.35, A:V.92, A:W.94, A:W.94 Hydrogen bonds: B:Y.35 pi-Stacking: B:W.99 pi-Cation interactions: B:W.99 Salt bridges: A:E.105

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tars, K. et al., Different Binding Modes of Free and Carrier-Protein-Coupled Nicotine in a Human Monoclonal Antibody. J.Mol.Biol. (2012)

Release Date

2011-11-16

Peptides

FAB FRAGMENT, HEAVY CHAIN: A
FAB FRAGMENT, LIGHT CHAIN: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

FAB FRAGMENT, HEAVY CHAIN

FAB FRAGMENT, LIGHT CHAIN