SMTL ID : 2yl5.1 (3 other biounits)

Inhibition of the pneumococcal virulence factor StrH and molecular insights into N-glycan recognition and hydrolysis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

5 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: K.20, N.88, E.336, Y.337 No protein-ligand interaction detected (PLIP) MG.2: 2 residues within 4Å: Chain A: K.142, V.143 No protein-ligand interaction detected (PLIP) MG.3: 4 residues within 4Å: Chain A: Q.201, L.202, Y.203, G.204 No protein-ligand interaction detected (PLIP) MG.4: 3 residues within 4Å: Chain A: K.218, Q.223, D.244 No protein-ligand interaction detected (PLIP) MG.5: 7 residues within 4Å: Chain A: T.275, N.276, W.279, Y.280, M.325, L.326, S.327 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:N.276, A:M.325

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.6: 3 residues within 4Å: Chain A: E.36, N.360, N.362 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.36, A:E.36, A:N.360, A:N.362 Water bridges: A:A.363 EDO.7: 3 residues within 4Å: Chain A: R.19, W.329, D.331 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.19, A:R.19, A:D.331 Water bridges: A:W.250 EDO.8: 8 residues within 4Å: Chain A: G.119, H.120, T.146, T.147, E.183, A.185, N.186, D.187 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.120, A:T.147, A:N.186, A:D.187

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pluvinage, B. et al., Inhibition of the Pneumococcal Virulence Factor Strh and Molecular Insights Into N-Glycan Recognition and Hydrolysis. Structure (2011)

Release Date

2011-09-14

Peptides

BETA-N-ACETYLHEXOSAMINIDASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

BETA-N-ACETYLHEXOSAMINIDASE

Related Entries With Identical Sequence