SMTL ID : 2yla.4 (3 other biounits)

INHIBITION OF THE PNEUMOCOCCAL VIRULENCE FACTOR STRH AND MOLECULAR INSIGHTS INTO N-GLYCAN RECOGNITION AND HYDROLYSIS

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x NAG- BMA- MAN- NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-BMA-MAN-NAG-NAG.1: 18 residues within 4Å: Chain A: R.19, H.120, D.182, Q.183, N.186, A.191, F.227, W.250, S.251, G.253, W.254, G.277, D.278, Y.280, I.282, G.292, W.329, D.331 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.183, A:D.331, A:G.277, A:D.278, A:G.292 Hydrophobic interactions: A:W.250, A:W.254 Water bridges: A:Y.280

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 1 residues within 4Å: Chain A: D.289 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pluvinage, B. et al., Inhibition of the Pneumococcal Virulence Factor Strh and Molecular Insights Into N-Glycan Recognition and Hydrolysis. Structure (2011)

Release Date

2011-09-07

Peptides

BETA-N-ACETYLHEXOSAMINIDASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

BETA-N-ACETYLHEXOSAMINIDASE

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