SMTL ID : 2yln.1

Crystal structure of the L-cystine solute receptor of Neisseria gonorrhoeae in the closed conformation

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.12 Å

Oligo State

monomer

Ligands

2 x CYS: CYSTEINE(Non-covalent)

CYS.1: 10 residues within 4Å: Chain A: Y.67, W.105, N.122, Q.123, V.124, R.131, S.173, N.174, Y.175 Ligands: CYS.2 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.174, A:N.174 Water bridges: A:G.125, A:T.127, A:N.174 Salt bridges: A:R.131 CYS.2: 9 residues within 4Å: Chain A: E.64, Y.67, W.105, S.170, Y.175, G.191, L.192, N.209 Ligands: CYS.1 7 PLIP interactions: 1 Ligand-Ligand interactions, 6 interactions with chain A Water bridges: C.2, A:S.170, A:S.173 Hydrogen bonds: A:E.64, A:S.170, A:L.192, A:N.209

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 1 residues within 4Å: Chain A: E.261 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.261 SO4.4: 2 residues within 4Å: Chain A: A.193 Ligands: GOL.7 3 PLIP interactions: 3 interactions with chain A Water bridges: A:N.221, A:N.221, A:N.221

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 5 residues within 4Å: Chain A: S.107, A.110, G.111, A.114, R.116 No protein-ligand interaction detected (PLIP) GOL.6: 7 residues within 4Å: Chain A: G.145, A.146, E.211, S.231, A.232, A.234, K.237 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.231, A:A.232, A:K.237 Water bridges: A:E.211, A:A.234, A:K.237 GOL.7: 3 residues within 4Å: Chain A: D.190, Q.194 Ligands: SO4.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.190, A:D.190 GOL.8: 6 residues within 4Å: Chain A: S.46, R.52, T.60, G.115, F.117, D.118 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.46 Water bridges: A:R.52, A:R.52 GOL.9: 1 residues within 4Å: Chain A: Q.132 1 PLIP interactions: 1 interactions with chain A Water bridges: A:K.246 GOL.10: 5 residues within 4Å: Chain A: K.137, P.140, W.143, V.238, G.239 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.137, A:G.239, A:G.239

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bulut, H. et al., Crystal Structures of Two Solute Receptors for L-Cystine and L-Cysteine, Respectively, of the Human Pathogen Neisseria Gonorrhoeae. J.Mol.Biol. (2012)

Release Date

2011-12-14

Peptides

PUTATIVE ABC TRANSPORTER, PERIPLASMIC BINDING PROTEIN, AMINO ACID: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PUTATIVE ABC TRANSPORTER, PERIPLASMIC BINDING PROTEIN, AMINO ACID

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