SMTL ID : 2ym1.1

SNAPSHOTS OF ENZYMATIC BAEYER-VILLIGER CATALYSIS: OXYGEN ACTIVATION AND INTERMEDIATE STABILIZATION: Arg337Lys MUTANT IN COMPLEX WITH NADP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.28 Å

Oligo State

monomer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 34 residues within 4Å: Chain A: V.22, G.23, G.25, F.26, S.27, I.45, E.46, T.47, G.52, G.53, V.54, W.55, W.57, N.58, C.65, D.66, I.67, Y.72, T.117, T.118, V.119, A.149, S.150, G.151, Q.152, L.153, S.154, I.399, S.444, N.445, M.446, I.450 Ligands: NAP.2, OXY.3 29 PLIP interactions: 29 interactions with chain A Hydrophobic interactions: A:V.54, A:V.54, A:W.55, A:N.58, A:L.153, A:L.153 Hydrogen bonds: A:G.25, A:S.27, A:S.27, A:T.47, A:G.52, A:V.54, A:W.57, A:D.66, A:I.67, A:Y.72, A:Y.72, A:V.119, A:V.119, A:Q.152, A:M.446 Water bridges: A:A.24, A:F.26, A:F.26, A:G.28, A:G.53, A:G.151, A:Q.152, A:Q.152

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.2: 24 residues within 4Å: Chain A: Y.60, R.64, D.66, L.153, P.159, I.192, G.193, T.194, G.195, S.196, S.197, Q.200, R.217, T.218, H.220, K.336, K.337, A.386, T.387, G.388, F.389, W.501 Ligands: FAD.1, OXY.3 29 PLIP interactions: 29 interactions with chain A Hydrogen bonds: A:D.66, A:T.194, A:T.194, A:T.194, A:G.195, A:S.197, A:S.197, A:Q.200, A:Q.200, A:R.217, A:T.218, A:K.337, A:W.501 Water bridges: A:S.196, A:S.196, A:G.198, A:R.217, A:R.217, A:H.220, A:H.220, A:K.336, A:G.388, A:G.388, A:F.389 Salt bridges: A:R.217, A:H.220, A:H.220, A:K.336 pi-Cation interactions: A:R.217

1 x OXY: OXYGEN MOLECULE(Non-functional Binders)

OXY.3: 2 residues within 4Å: Ligands: FAD.1, NAP.2 No protein-ligand interaction detected (PLIP)

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.4: 19 residues within 4Å: Chain A: M.148, S.150, G.151, Q.152, L.153, S.154, V.155, D.390, A.391, L.392, T.393, G.394, A.395, L.396, F.433, I.434, A.435, G.436, P.437 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.150, A:S.154, A:V.155, A:D.390, A:L.392, A:A.395, A:I.434

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.5: 6 residues within 4Å: Chain A: T.47, W.57, S.154, P.156, N.176, K.398 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.176, A:K.398

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.6: 4 residues within 4Å: Chain A: D.459, Y.463, A.532, Y.536 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Orru, R. et al., Snapshots of Enzymatic Baeyer-Villiger Catalysis: Oxygen Activation and Intermediate Stabilization. J.Biol.Chem. (2011)

Release Date

2011-06-22

Peptides

PHENYLACETONE MONOOXYGENASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PHENYLACETONE MONOOXYGENASE

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