SMTL ID : 2ym9.5 (4 other biounits)

SipD from Salmonella typhimurium

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-tetramer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: S.88, N.91 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.91 SO4.2: 3 residues within 4Å: Chain A: K.266, Q.300, N.303 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.300, A:N.303 Salt bridges: A:K.266 SO4.4: 4 residues within 4Å: Chain B: K.191, S.281, K.282 Chain C: E.240 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.282 Salt bridges: B:K.191

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 3 residues within 4Å: Chain A: K.191, S.281, K.282 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.191, A:S.281 GOL.5: 3 residues within 4Å: Chain B: K.266, Q.300, N.303 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.300, B:N.303, B:N.303

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lunelli, M. et al., Crystal Structure of Prgi-Sipd: Insight Into a Secretion Competent State of the Type Three Secretion System Needle Tip and its Interaction with Host Ligands. Plos Pathog. (2011)

Release Date

2011-08-17

Peptides

CELL INVASION PROTEIN SIPD: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

CELL INVASION PROTEIN SIPD

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