SMTL ID : 2ymt.1

gamma 2 adaptin EAR domain crystal structure with phage peptide GEEWGPWV

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x GLU- TRP- GLY- PRO- TRP- VAL- NH2: PHAGE DISPLAY DERIVED GAMMA 2 ADAPTIN EAR DOMAIN BINDING PEPTIDE(Non-covalent)

GLU-TRP-GLY-PRO-TRP-VAL-NH2.1: 13 residues within 4Å: Chain A: Q.53, A.54, A.55, V.56, P.57, K.58, L.62, L.64, R.95, L.96, K.97, L.98, R.99 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:Q.53, A:A.55, A:L.62, A:L.64, A:R.95, A:K.97, A:R.99 Hydrogen bonds: A:A.54, A:A.54, A:V.56, A:K.58 Water bridges: A:V.56 pi-Cation interactions: A:K.97

1 x PDO: 1,3-PROPANDIOL(Non-covalent)

PDO.2: 2 residues within 4Å: Chain A: I.112, E.114 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.114

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jurgens, M.C. et al., The Hepatitis B Virus Pres1 Domain Hijacks Host Trafficking Proteins by Motif Mimicry. Nat.Chem.Biol. (2013)

Release Date

2013-07-10

Peptides

AP-1 COMPLEX SUBUNIT GAMMA-LIKE 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

AP-1 COMPLEX SUBUNIT GAMMA-LIKE 2

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