SMTL ID : 2yn5.1

Structural insight into the giant calcium-binding adhesin SiiE: implications for the adhesion of Salmonella enterica to polarized epithelial cells

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-tetramer

Ligands

18 x CA: CALCIUM ION(Non-covalent)

CA.1: 1 residues within 4Å: Chain A: N.128 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:N.128, H2O.4, H2O.4 CA.2: 5 residues within 4Å: Chain A: E.59, D.80, I.81, D.119, D.163 6 PLIP interactions: 5 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.59, A:D.80, A:I.81, A:D.119, A:D.163, H2O.2 CA.3: 5 residues within 4Å: Chain A: D.95, S.96, T.98, D.101, I.103 6 PLIP interactions: 5 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.95, A:S.96, A:T.98, A:D.101, A:I.103, H2O.3 CA.4: 4 residues within 4Å: Chain A: D.179, T.181, D.219, D.266 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.181, A:D.219, A:D.266, H2O.5, H2O.5 CA.5: 5 residues within 4Å: Chain A: D.194, N.195, S.198, D.201, V.203 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.194, A:N.195, A:S.198, A:D.201, A:V.203 CA.6: 5 residues within 4Å: Chain B: D.95, S.96, T.98, D.101, I.103 6 PLIP interactions: 5 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.95, B:S.96, B:T.98, B:D.101, B:I.103, H2O.8 CA.7: 4 residues within 4Å: Chain B: D.179, T.181, D.219, D.266 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:T.181, B:D.219, B:D.266, H2O.10, H2O.10 CA.8: 5 residues within 4Å: Chain B: D.194, N.195, S.198, D.201, V.203 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.194, B:N.195, B:S.198, B:D.201, B:V.203 CA.9: 5 residues within 4Å: Chain B: E.59, D.80, I.81, D.119, D.163 6 PLIP interactions: 5 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.59, B:D.80, B:I.81, B:D.119, B:D.163, H2O.7 CA.10: 1 residues within 4Å: Chain C: N.128 3 PLIP interactions: 1 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:N.128, H2O.15, H2O.15 CA.11: 5 residues within 4Å: Chain C: E.59, D.80, I.81, D.119, D.163 6 PLIP interactions: 5 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:E.59, C:D.80, C:I.81, C:D.119, C:D.163, H2O.13 CA.12: 5 residues within 4Å: Chain C: D.95, S.96, T.98, D.101, I.103 6 PLIP interactions: 5 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.95, C:S.96, C:T.98, C:D.101, C:I.103, H2O.14 CA.13: 4 residues within 4Å: Chain C: D.179, T.181, D.219, D.266 5 PLIP interactions: 3 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:T.181, C:D.219, C:D.266, H2O.16, H2O.16 CA.14: 5 residues within 4Å: Chain C: D.194, N.195, S.198, D.201, V.203 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:D.194, C:N.195, C:S.198, C:D.201, C:V.203 CA.15: 5 residues within 4Å: Chain D: D.95, S.96, T.98, D.101, I.103 6 PLIP interactions: 5 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:D.95, D:S.96, D:T.98, D:D.101, D:I.103, H2O.19 CA.16: 4 residues within 4Å: Chain D: D.179, T.181, D.219, D.266 5 PLIP interactions: 3 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:T.181, D:D.219, D:D.266, H2O.21, H2O.21 CA.17: 5 residues within 4Å: Chain D: D.194, N.195, S.198, D.201, V.203 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:D.194, D:N.195, D:S.198, D:D.201, D:V.203 CA.18: 5 residues within 4Å: Chain D: E.59, D.80, I.81, D.119, D.163 6 PLIP interactions: 5 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:E.59, D:D.80, D:I.81, D:D.119, D:D.163, H2O.18

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Griessl, M.H. et al., Structural Insight Into the Giant Ca(2+)-Binding Adhesin Siie: Implications for the Adhesion of Salmonella Enterica to Polarized Epithelial Cells. Structure (2013)

Release Date

2013-04-03

Peptides

PUTATIVE INNER MEMBRANE PROTEIN: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

PUTATIVE INNER MEMBRANE PROTEIN

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