SMTL ID : 2ync.3 (2 other biounits)

Plasmodium vivax N-myristoyltransferase in complex with YnC12-CoA thioester.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 6 residues within 4Å: Chain A: E.133, W.263, Y.311, I.381, V.382, L.384 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:E.133 pi-Cation interactions: A:W.263, A:W.263

1 x YNC: TETRADEC-13-YNOIC ACID - COA THIOESTER(Non-covalent)

YNC.2: 35 residues within 4Å: Chain A: Y.2, K.3, F.4, W.5, N.68, Y.69, V.70, V.134, N.135, F.136, L.137, C.138, V.139, R.144, S.145, K.146, R.147, L.148, A.149, P.150, I.153, T.157, I.160, N.161, I.165, W.166, Q.167, A.168, Y.170, T.171, A.172, V.174, L.176, Y.367 Ligands: MG.3 33 PLIP interactions: 33 interactions with chain A Hydrophobic interactions: A:W.5, A:Y.69, A:V.70, A:V.134, A:V.134, A:L.137, A:L.137, A:V.139, A:A.149, A:I.153, A:T.157, A:I.160, A:I.160, A:A.168, A:Y.170, A:Y.367, A:Y.367 Hydrogen bonds: A:K.3, A:F.4, A:W.5, A:F.136, A:L.137, A:L.137, A:V.139, A:S.145, A:R.147, A:L.148, A:A.149 Water bridges: A:R.147, A:R.147, A:R.147 Salt bridges: A:R.147, A:R.147

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 7 residues within 4Å: Chain A: L.143, R.144, S.145, K.146, R.147, L.148 Ligands: YNC.2 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:L.143

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 2 residues within 4Å: Chain A: Y.39, K.154 Ligand excluded by PLIP CL.5: 1 residues within 4Å: Chain A: R.35 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wright, M.H. et al., Validation of N-Myristoyltransferase as an Antimalarial Drug Target Using an Integrated Chemical Biology Approach. Nat.Chem. (2014)

Release Date

2014-01-15

Peptides

GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE