SMTL ID : 2yp0.1

Catalytic domain of mouse 2',3'-cyclic nucleotide 3'- phosphodiesterase, crystallized with 2'-AMPS

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

2 x OVE: 2'-O-(sulfidophosphinato)adenosine(Non-covalent)

OVE.1: 11 residues within 4Å: Chain A: L.10, Y.11, H.73, T.75, F.78, R.150, H.152, T.154, P.163, V.164, T.166 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:H.73, A:T.75, A:T.75, A:H.152, A:T.154, A:T.154 Water bridges: A:F.78 pi-Stacking: A:F.78 OVE.3: 3 residues within 4Å: Chain A: R.46, H.47, K.199 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.46, A:R.46, A:R.46, A:H.47, A:K.199 pi-Cation interactions: A:R.46, A:R.46

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 9 residues within 4Å: Chain A: F.7, L.8, P.9, F.12, A.91, V.96, K.97, Y.100, Y.220 No protein-ligand interaction detected (PLIP)

1 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.4: 8 residues within 4Å: Chain A: R.98, S.99, G.101, K.102, A.103, F.104, Q.127, I.215 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.98, A:A.103

1 x ACY: ACETIC ACID(Non-functional Binders)

ACY.5: 9 residues within 4Å: Chain A: W.132, S.142, L.145, P.146, P.147, G.148, S.149, R.150, L.171 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:W.132, A:G.148, A:S.149, A:R.150

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Myllykoski, M. et al., Crystallographic Analysis of the Reaction Cycle of 2',3'-Cyclic Nucleotide 3'-Phosphodiesterase, a Unique Member of the 2H Phosphoesterase Family. J.Mol.Biol. (2013)

Release Date

2013-07-10

Peptides

2', 3'-CYCLIC NUCLEOTIDE 3'-PHOSPHODIESTERASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

2', 3'-CYCLIC NUCLEOTIDE 3'-PHOSPHODIESTERASE

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