- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.88 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x NAG- NAG- MAN: alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG-NAG.2: 9 residues within 4Å:- Chain A: A.163, L.164, N.165, R.201, N.246, S.247, T.248
- Chain B: I.217
- Ligands: NAG-NAG-MAN.1
1 PLIP interactions:1 interactions with chain B- Water bridges: B:D.188
NAG-NAG.12: 9 residues within 4Å:- Chain B: A.163, L.164, N.165, R.201, N.246, S.247, T.248
- Chain C: I.217
- Ligands: NAG-NAG-MAN.11
1 PLIP interactions:1 interactions with chain C- Water bridges: C:D.188
NAG-NAG.22: 9 residues within 4Å:- Chain A: I.217
- Chain C: A.163, L.164, N.165, R.201, N.246, S.247, T.248
- Ligands: NAG-NAG-MAN.21
1 PLIP interactions:1 interactions with chain A- Water bridges: A:D.188
- 3 x NAG- GAL- SIA: N-acetyl-alpha-neuraminic acid-(2-6)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-GAL-SIA.3: 13 residues within 4Å:- Chain A: Y.98, G.134, T.135, S.136, S.137, N.145, W.153, S.193, L.194, R.222, D.225, I.226, S.228
10 PLIP interactions:10 interactions with chain A- Hydrophobic interactions: A:L.194, A:W.153, A:L.194
- Hydrogen bonds: A:S.193, A:S.193, A:R.222, A:D.225, A:T.135, A:S.137, A:S.228, A:S.228
- Water bridges: A:D.190, A:D.190, A:S.137, A:T.135, A:T.135, A:S.137, A:N.145
NAG-GAL-SIA.13: 13 residues within 4Å:- Chain B: Y.98, G.134, T.135, S.136, S.137, N.145, W.153, S.193, L.194, R.222, D.225, I.226, S.228
10 PLIP interactions:10 interactions with chain B- Hydrophobic interactions: B:L.194, B:W.153, B:L.194
- Hydrogen bonds: B:S.193, B:S.193, B:R.222, B:D.225, B:T.135, B:S.137, B:S.228, B:S.228
- Water bridges: B:D.190, B:D.190, B:S.137, B:T.135, B:T.135, B:S.137, B:N.145
NAG-GAL-SIA.23: 13 residues within 4Å:- Chain C: Y.98, G.134, T.135, S.136, S.137, N.145, W.153, S.193, L.194, R.222, D.225, I.226, S.228
10 PLIP interactions:10 interactions with chain C- Hydrophobic interactions: C:L.194, C:W.153, C:L.194
- Hydrogen bonds: C:S.193, C:S.193, C:R.222, C:D.225, C:T.135, C:S.137, C:S.228, C:S.228
- Water bridges: C:D.190, C:D.190, C:S.137, C:T.135, C:T.135, C:S.137, C:N.145
- 12 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.4: 3 residues within 4Å:- Chain A: N.38, T.318, L.381
3 PLIP interactions:3 interactions with chain A- Water bridges: A:N.38, A:N.38, A:T.318
NAG.5: 3 residues within 4Å:- Chain A: E.62, N.63, Y.94
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:N.63, A:Y.94
- Water bridges: A:N.63, A:N.63, A:K.92
NAG.6: 2 residues within 4Å:- Chain A: N.133
- Ligands: EPE.8
2 PLIP interactions:2 interactions with chain A- Water bridges: A:Q.132, A:N.133
NAG.7: 4 residues within 4Å:- Chain A: S.45, N.285, V.297, N.298
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:N.285, A:V.297, A:N.298
- Water bridges: A:V.297
NAG.14: 3 residues within 4Å:- Chain B: N.38, T.318, L.381
3 PLIP interactions:3 interactions with chain B- Water bridges: B:N.38, B:N.38, B:T.318
NAG.15: 3 residues within 4Å:- Chain B: E.62, N.63, Y.94
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:N.63, B:Y.94
- Water bridges: B:N.63, B:N.63, B:K.92
NAG.16: 2 residues within 4Å:- Chain B: N.133
- Ligands: EPE.18
2 PLIP interactions:2 interactions with chain B- Water bridges: B:Q.132, B:N.133
NAG.17: 4 residues within 4Å:- Chain B: S.45, N.285, V.297, N.298
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:N.285, B:V.297, B:N.298
- Water bridges: B:V.297
NAG.24: 3 residues within 4Å:- Chain C: N.38, T.318, L.381
3 PLIP interactions:3 interactions with chain C- Water bridges: C:N.38, C:N.38, C:T.318
NAG.25: 3 residues within 4Å:- Chain C: E.62, N.63, Y.94
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:N.63, C:Y.94
- Water bridges: C:N.63, C:N.63, C:K.92
NAG.26: 2 residues within 4Å:- Chain C: N.133
- Ligands: EPE.28
2 PLIP interactions:2 interactions with chain C- Water bridges: C:Q.132, C:N.133
NAG.27: 4 residues within 4Å:- Chain C: S.45, N.285, V.297, N.298
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:N.285, C:V.297, C:N.298
- Water bridges: C:V.297
- 6 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)
EPE.8: 10 residues within 4Å:- Chain A: D.77, Q.80, R.141, S.146, F.147, F.148, S.149, L.151, R.255
- Ligands: NAG.6
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:D.77, A:Q.80, A:Q.80, A:R.255
- Water bridges: A:N.152
- Salt bridges: A:R.141
EPE.9: 5 residues within 4Å:- Chain A: N.81, E.119, F.120, N.121, N.122
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:N.81, A:F.120, A:N.122, A:N.122
- Water bridges: A:K.83, A:E.119
EPE.18: 10 residues within 4Å:- Chain B: D.77, Q.80, R.141, S.146, F.147, F.148, S.149, L.151, R.255
- Ligands: NAG.16
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:D.77, B:Q.80, B:Q.80, B:R.255
- Water bridges: B:N.152
- Salt bridges: B:R.141
EPE.19: 5 residues within 4Å:- Chain B: N.81, E.119, F.120, N.121, N.122
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:N.81, B:F.120, B:N.122, B:N.122
- Water bridges: B:K.83, B:E.119
EPE.28: 10 residues within 4Å:- Chain C: D.77, Q.80, R.141, S.146, F.147, F.148, S.149, L.151, R.255
- Ligands: NAG.26
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:D.77, C:Q.80, C:Q.80, C:R.255
- Water bridges: C:N.152
- Salt bridges: C:R.141
EPE.29: 5 residues within 4Å:- Chain C: N.81, E.119, F.120, N.121, N.122
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:N.81, C:F.120, C:N.122, C:N.122
- Water bridges: C:K.83, C:E.119
- 3 x TAM: TRIS(HYDROXYETHYL)AMINOMETHANE(Non-covalent)
TAM.10: 2 residues within 4Å:- Chain A: R.383
- Chain B: Y.423
4 PLIP interactions:3 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:R.383
- Water bridges: A:R.383, A:E.432
- Hydrophobic interactions: B:Y.423
TAM.20: 2 residues within 4Å:- Chain B: R.383
- Chain C: Y.423
4 PLIP interactions:3 interactions with chain B, 1 interactions with chain C- Hydrogen bonds: B:R.383
- Water bridges: B:R.383, B:E.432
- Hydrophobic interactions: C:Y.423
TAM.30: 2 residues within 4Å:- Chain A: Y.423
- Chain C: R.383
4 PLIP interactions:3 interactions with chain C, 1 interactions with chain A- Hydrogen bonds: C:R.383
- Water bridges: C:R.383, C:E.432
- Hydrophobic interactions: A:Y.423
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lin, Y.P. et al., Evolution of the Receptor Binding Properties of the Influenza A(H3N2) Hemagglutinin. Proc.Natl.Acad.Sci.USA (2012)
- Release Date
- 2012-11-07
- Peptides
- HEMAGGLUTININ: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.88 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x NAG- NAG- MAN: alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 3 x NAG- GAL- SIA: N-acetyl-alpha-neuraminic acid-(2-6)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 12 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 6 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)
- 3 x TAM: TRIS(HYDROXYETHYL)AMINOMETHANE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lin, Y.P. et al., Evolution of the Receptor Binding Properties of the Influenza A(H3N2) Hemagglutinin. Proc.Natl.Acad.Sci.USA (2012)
- Release Date
- 2012-11-07
- Peptides
- HEMAGGLUTININ: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A