- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.79 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x NAG- NAG- MAN: alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG-NAG.2: 8 residues within 4Å:- Chain A: A.163, L.164, N.165, R.201, N.246, S.247, T.248
- Ligands: NAG-NAG-MAN.1
1 PLIP interactions:1 interactions with chain B- Water bridges: B:D.188
NAG-NAG.14: 8 residues within 4Å:- Chain B: A.163, L.164, N.165, R.201, N.246, S.247, T.248
- Ligands: NAG-NAG-MAN.13
1 PLIP interactions:1 interactions with chain C- Water bridges: C:D.188
NAG-NAG.26: 8 residues within 4Å:- Chain C: A.163, L.164, N.165, R.201, N.246, S.247, T.248
- Ligands: NAG-NAG-MAN.25
1 PLIP interactions:1 interactions with chain A- Water bridges: A:D.188
- 3 x GAL- SIA: N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose(Non-covalent)
GAL-SIA.3: 12 residues within 4Å:- Chain A: Y.98, G.134, T.135, S.136, S.137, N.145, W.153, T.155, H.183, D.190, L.194, S.228
10 PLIP interactions:10 interactions with chain A- Hydrophobic interactions: A:W.153, A:T.155
- Hydrogen bonds: A:Y.98, A:T.135, A:S.137, A:D.190, A:S.228, A:S.228
- Water bridges: A:T.135, A:T.135
GAL-SIA.15: 12 residues within 4Å:- Chain B: Y.98, G.134, T.135, S.136, S.137, N.145, W.153, T.155, H.183, D.190, L.194, S.228
10 PLIP interactions:10 interactions with chain B- Hydrophobic interactions: B:W.153, B:T.155
- Hydrogen bonds: B:Y.98, B:T.135, B:S.137, B:D.190, B:S.228, B:S.228
- Water bridges: B:T.135, B:T.135
GAL-SIA.27: 12 residues within 4Å:- Chain C: Y.98, G.134, T.135, S.136, S.137, N.145, W.153, T.155, H.183, D.190, L.194, S.228
10 PLIP interactions:10 interactions with chain C- Hydrophobic interactions: C:W.153, C:T.155
- Hydrogen bonds: C:Y.98, C:T.135, C:S.137, C:D.190, C:S.228, C:S.228
- Water bridges: C:T.135, C:T.135
- 15 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.4: 3 residues within 4Å:- Chain A: N.38, T.318, L.381
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:T.318
NAG.5: 3 residues within 4Å:- Chain A: E.62, N.63, Y.94
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:N.63
- Water bridges: A:N.63, A:K.92
NAG.6: 2 residues within 4Å:- Chain A: N.133
- Ligands: EPE.9
1 PLIP interactions:1 interactions with chain A- Water bridges: A:Q.132
NAG.7: 4 residues within 4Å:- Chain A: S.45, N.285, V.297, N.298
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:N.285, A:V.297, A:N.298
- Water bridges: A:V.297
NAG.8: 5 residues within 4Å:- Chain A: A.476, G.479, S.480, N.483, T.485
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:N.483
- Hydrogen bonds: A:A.476, A:T.485
- Water bridges: A:R.482
NAG.16: 3 residues within 4Å:- Chain B: N.38, T.318, L.381
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:T.318
NAG.17: 3 residues within 4Å:- Chain B: E.62, N.63, Y.94
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:N.63
- Water bridges: B:N.63, B:K.92
NAG.18: 2 residues within 4Å:- Chain B: N.133
- Ligands: EPE.21
1 PLIP interactions:1 interactions with chain B- Water bridges: B:Q.132
NAG.19: 4 residues within 4Å:- Chain B: S.45, N.285, V.297, N.298
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:N.285, B:V.297, B:N.298
- Water bridges: B:V.297
NAG.20: 5 residues within 4Å:- Chain B: A.476, G.479, S.480, N.483, T.485
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:N.483
- Hydrogen bonds: B:A.476, B:T.485
- Water bridges: B:R.482
NAG.28: 3 residues within 4Å:- Chain C: N.38, T.318, L.381
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:T.318
NAG.29: 3 residues within 4Å:- Chain C: E.62, N.63, Y.94
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:N.63
- Water bridges: C:N.63, C:K.92
NAG.30: 2 residues within 4Å:- Chain C: N.133
- Ligands: EPE.33
1 PLIP interactions:1 interactions with chain C- Water bridges: C:Q.132
NAG.31: 4 residues within 4Å:- Chain C: S.45, N.285, V.297, N.298
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:N.285, C:V.297, C:N.298
- Water bridges: C:V.297
NAG.32: 5 residues within 4Å:- Chain C: A.476, G.479, S.480, N.483, T.485
4 PLIP interactions:4 interactions with chain C- Hydrophobic interactions: C:N.483
- Hydrogen bonds: C:A.476, C:T.485
- Water bridges: C:R.482
- 9 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)
EPE.9: 11 residues within 4Å:- Chain A: D.77, Q.80, R.141, R.142, S.146, F.147, F.148, S.149, L.151, R.255
- Ligands: NAG.6
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:D.77, A:F.148, A:R.255
- Water bridges: A:Q.80
- Salt bridges: A:R.141, A:R.142
EPE.10: 9 residues within 4Å:- Chain A: S.95, Y.98, P.99, Y.100, Y.105, V.223, R.224, E.401
- Chain C: R.208
8 PLIP interactions:7 interactions with chain A, 1 interactions with chain C- Hydrogen bonds: A:S.95, A:Y.100, A:Y.100, A:Y.100, C:R.208
- Water bridges: A:R.224
- Salt bridges: A:R.224
- pi-Cation interactions: A:Y.105
EPE.11: 3 residues within 4Å:- Chain A: P.55, E.280, E.390
4 PLIP interactions:4 interactions with chain A- Water bridges: A:P.55
- Salt bridges: A:E.280, A:E.280, A:E.390
EPE.21: 11 residues within 4Å:- Chain B: D.77, Q.80, R.141, R.142, S.146, F.147, F.148, S.149, L.151, R.255
- Ligands: NAG.18
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:D.77, B:F.148, B:R.255
- Water bridges: B:Q.80
- Salt bridges: B:R.141, B:R.142
EPE.22: 9 residues within 4Å:- Chain A: R.208
- Chain B: S.95, Y.98, P.99, Y.100, Y.105, V.223, R.224, E.401
8 PLIP interactions:7 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:S.95, B:Y.100, B:Y.100, B:Y.100, A:R.208
- Water bridges: B:R.224
- Salt bridges: B:R.224
- pi-Cation interactions: B:Y.105
EPE.23: 3 residues within 4Å:- Chain B: P.55, E.280, E.390
4 PLIP interactions:4 interactions with chain B- Water bridges: B:P.55
- Salt bridges: B:E.280, B:E.280, B:E.390
EPE.33: 11 residues within 4Å:- Chain C: D.77, Q.80, R.141, R.142, S.146, F.147, F.148, S.149, L.151, R.255
- Ligands: NAG.30
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:D.77, C:F.148, C:R.255
- Water bridges: C:Q.80
- Salt bridges: C:R.141, C:R.142
EPE.34: 9 residues within 4Å:- Chain B: R.208
- Chain C: S.95, Y.98, P.99, Y.100, Y.105, V.223, R.224, E.401
8 PLIP interactions:7 interactions with chain C, 1 interactions with chain B- Hydrogen bonds: C:S.95, C:Y.100, C:Y.100, C:Y.100, B:R.208
- Water bridges: C:R.224
- Salt bridges: C:R.224
- pi-Cation interactions: C:Y.105
EPE.35: 3 residues within 4Å:- Chain C: P.55, E.280, E.390
4 PLIP interactions:4 interactions with chain C- Water bridges: C:P.55
- Salt bridges: C:E.280, C:E.280, C:E.390
- 3 x TAM: TRIS(HYDROXYETHYL)AMINOMETHANE(Non-covalent)
TAM.12: 3 residues within 4Å:- Chain A: R.383
- Chain B: Y.423, E.426
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:Y.423
- Hydrogen bonds: A:R.383
TAM.24: 3 residues within 4Å:- Chain B: R.383
- Chain C: Y.423, E.426
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain C- Hydrogen bonds: B:R.383
- Hydrophobic interactions: C:Y.423
TAM.36: 3 residues within 4Å:- Chain A: Y.423, E.426
- Chain C: R.383
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain C- Hydrophobic interactions: A:Y.423
- Hydrogen bonds: C:R.383
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lin, Y.P. et al., Evolution of the Receptor Binding Properties of the Influenza A(H3N2) Hemagglutinin. Proc.Natl.Acad.Sci.USA (2012)
- Release Date
- 2012-11-07
- Peptides
- HEMAGGLUTININ: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.79 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x NAG- NAG- MAN: alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 3 x GAL- SIA: N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose(Non-covalent)
- 15 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 9 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)
- 3 x TAM: TRIS(HYDROXYETHYL)AMINOMETHANE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lin, Y.P. et al., Evolution of the Receptor Binding Properties of the Influenza A(H3N2) Hemagglutinin. Proc.Natl.Acad.Sci.USA (2012)
- Release Date
- 2012-11-07
- Peptides
- HEMAGGLUTININ: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A