- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x NAG- NAG- MAN: alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG-NAG.2: 8 residues within 4Å:- Chain A: A.163, L.164, N.165, R.201, N.246, S.247, T.248
- Ligands: NAG-NAG-MAN.1
1 PLIP interactions:1 interactions with chain B- Water bridges: B:D.188
NAG-NAG.15: 8 residues within 4Å:- Chain B: A.163, L.164, N.165, R.201, N.246, S.247, T.248
- Ligands: NAG-NAG-MAN.14
1 PLIP interactions:1 interactions with chain C- Water bridges: C:D.188
NAG-NAG.28: 8 residues within 4Å:- Chain C: A.163, L.164, N.165, R.201, N.246, S.247, T.248
- Ligands: NAG-NAG-MAN.27
1 PLIP interactions:1 interactions with chain A- Water bridges: A:D.188
- 18 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.3: 3 residues within 4Å:- Chain A: N.38, T.318, L.381
Ligand excluded by PLIPNAG.4: 3 residues within 4Å:- Chain A: E.62, N.63, Y.94
Ligand excluded by PLIPNAG.5: 2 residues within 4Å:- Chain A: N.126, T.128
Ligand excluded by PLIPNAG.6: 3 residues within 4Å:- Chain A: N.133, R.255
- Ligands: EPE.9
Ligand excluded by PLIPNAG.7: 4 residues within 4Å:- Chain A: S.45, N.285, V.297, N.298
Ligand excluded by PLIPNAG.8: 6 residues within 4Å:- Chain A: A.476, G.479, S.480, R.482, N.483, T.485
Ligand excluded by PLIPNAG.16: 3 residues within 4Å:- Chain B: N.38, T.318, L.381
Ligand excluded by PLIPNAG.17: 3 residues within 4Å:- Chain B: E.62, N.63, Y.94
Ligand excluded by PLIPNAG.18: 2 residues within 4Å:- Chain B: N.126, T.128
Ligand excluded by PLIPNAG.19: 3 residues within 4Å:- Chain B: N.133, R.255
- Ligands: EPE.22
Ligand excluded by PLIPNAG.20: 4 residues within 4Å:- Chain B: S.45, N.285, V.297, N.298
Ligand excluded by PLIPNAG.21: 6 residues within 4Å:- Chain B: A.476, G.479, S.480, R.482, N.483, T.485
Ligand excluded by PLIPNAG.29: 3 residues within 4Å:- Chain C: N.38, T.318, L.381
Ligand excluded by PLIPNAG.30: 3 residues within 4Å:- Chain C: E.62, N.63, Y.94
Ligand excluded by PLIPNAG.31: 2 residues within 4Å:- Chain C: N.126, T.128
Ligand excluded by PLIPNAG.32: 3 residues within 4Å:- Chain C: N.133, R.255
- Ligands: EPE.35
Ligand excluded by PLIPNAG.33: 4 residues within 4Å:- Chain C: S.45, N.285, V.297, N.298
Ligand excluded by PLIPNAG.34: 6 residues within 4Å:- Chain C: A.476, G.479, S.480, R.482, N.483, T.485
Ligand excluded by PLIP- 9 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)
EPE.9: 10 residues within 4Å:- Chain A: D.77, Q.80, R.141, S.146, F.147, F.148, S.149, L.151, R.255
- Ligands: NAG.6
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:D.77, A:Q.80, A:Q.80, A:L.151, A:R.255
- Water bridges: A:D.77
- Salt bridges: A:R.141
EPE.10: 8 residues within 4Å:- Chain A: S.95, Y.98, P.99, Y.100, Y.105, R.224, E.401
- Chain C: R.208
9 PLIP interactions:8 interactions with chain A, 1 interactions with chain C- Hydrogen bonds: A:S.95, A:S.95, A:Y.100, A:Y.100, A:E.401, C:R.208
- Water bridges: A:S.95, A:R.224
- Salt bridges: A:R.224
EPE.11: 5 residues within 4Å:- Chain A: N.81, E.119, F.120, N.121, N.122
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:N.81, A:F.120, A:N.122
EPE.22: 10 residues within 4Å:- Chain B: D.77, Q.80, R.141, S.146, F.147, F.148, S.149, L.151, R.255
- Ligands: NAG.19
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:D.77, B:Q.80, B:Q.80, B:L.151, B:R.255
- Water bridges: B:D.77
- Salt bridges: B:R.141
EPE.23: 8 residues within 4Å:- Chain A: R.208
- Chain B: S.95, Y.98, P.99, Y.100, Y.105, R.224, E.401
9 PLIP interactions:8 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:S.95, B:S.95, B:Y.100, B:Y.100, B:E.401, A:R.208
- Water bridges: B:S.95, B:R.224
- Salt bridges: B:R.224
EPE.24: 5 residues within 4Å:- Chain B: N.81, E.119, F.120, N.121, N.122
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:N.81, B:F.120, B:N.122
EPE.35: 10 residues within 4Å:- Chain C: D.77, Q.80, R.141, S.146, F.147, F.148, S.149, L.151, R.255
- Ligands: NAG.32
7 PLIP interactions:7 interactions with chain C- Hydrogen bonds: C:D.77, C:Q.80, C:Q.80, C:L.151, C:R.255
- Water bridges: C:D.77
- Salt bridges: C:R.141
EPE.36: 8 residues within 4Å:- Chain B: R.208
- Chain C: S.95, Y.98, P.99, Y.100, Y.105, R.224, E.401
9 PLIP interactions:8 interactions with chain C, 1 interactions with chain B- Hydrogen bonds: C:S.95, C:S.95, C:Y.100, C:Y.100, C:E.401, B:R.208
- Water bridges: C:S.95, C:R.224
- Salt bridges: C:R.224
EPE.37: 5 residues within 4Å:- Chain C: N.81, E.119, F.120, N.121, N.122
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:N.81, C:F.120, C:N.122
- 3 x TAM: TRIS(HYDROXYETHYL)AMINOMETHANE(Non-covalent)
TAM.12: 2 residues within 4Å:- Chain A: R.383
- Chain B: Y.423
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:Y.423
- Water bridges: B:S.422
- Hydrogen bonds: A:R.383
TAM.25: 2 residues within 4Å:- Chain B: R.383
- Chain C: Y.423
3 PLIP interactions:2 interactions with chain C, 1 interactions with chain B- Hydrophobic interactions: C:Y.423
- Water bridges: C:S.422
- Hydrogen bonds: B:R.383
TAM.38: 2 residues within 4Å:- Chain A: Y.423
- Chain C: R.383
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain C- Hydrophobic interactions: A:Y.423
- Water bridges: A:S.422
- Hydrogen bonds: C:R.383
- 3 x SIA: N-acetyl-alpha-neuraminic acid(Non-covalent)
SIA.13: 10 residues within 4Å:- Chain A: G.134, T.135, S.136, S.137, N.145, W.153, T.155, D.190, F.193, L.194
9 PLIP interactions:9 interactions with chain A- Hydrophobic interactions: A:W.153, A:T.155
- Hydrogen bonds: A:T.135, A:T.135, A:S.137, A:D.190
- Water bridges: A:Y.98, A:T.135, A:T.135
SIA.26: 10 residues within 4Å:- Chain B: G.134, T.135, S.136, S.137, N.145, W.153, T.155, D.190, F.193, L.194
9 PLIP interactions:9 interactions with chain B- Hydrophobic interactions: B:W.153, B:T.155
- Hydrogen bonds: B:T.135, B:T.135, B:S.137, B:D.190
- Water bridges: B:Y.98, B:T.135, B:T.135
SIA.39: 10 residues within 4Å:- Chain C: G.134, T.135, S.136, S.137, N.145, W.153, T.155, D.190, F.193, L.194
9 PLIP interactions:9 interactions with chain C- Hydrophobic interactions: C:W.153, C:T.155
- Hydrogen bonds: C:T.135, C:T.135, C:S.137, C:D.190
- Water bridges: C:Y.98, C:T.135, C:T.135
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lin, Y.P. et al., Evolution of the Receptor Binding Properties of the Influenza A(H3N2) Hemagglutinin. Proc.Natl.Acad.Sci.USA (2012)
- Release Date
- 2012-11-07
- Peptides
- HEMAGGLUTININ: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x NAG- NAG- MAN: alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 18 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 9 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)
- 3 x TAM: TRIS(HYDROXYETHYL)AMINOMETHANE(Non-covalent)
- 3 x SIA: N-acetyl-alpha-neuraminic acid(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lin, Y.P. et al., Evolution of the Receptor Binding Properties of the Influenza A(H3N2) Hemagglutinin. Proc.Natl.Acad.Sci.USA (2012)
- Release Date
- 2012-11-07
- Peptides
- HEMAGGLUTININ: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A