- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.79 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x NAG- NAG- MAN: alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG-NAG.2: 8 residues within 4Å:- Chain A: A.163, L.164, N.165, R.201, N.246, S.247, T.248
- Ligands: NAG-NAG-MAN.1
1 PLIP interactions:1 interactions with chain B- Water bridges: B:D.188
NAG-NAG.15: 8 residues within 4Å:- Chain B: A.163, L.164, N.165, R.201, N.246, S.247, T.248
- Ligands: NAG-NAG-MAN.14
1 PLIP interactions:1 interactions with chain C- Water bridges: C:D.188
NAG-NAG.28: 8 residues within 4Å:- Chain C: A.163, L.164, N.165, R.201, N.246, S.247, T.248
- Ligands: NAG-NAG-MAN.27
1 PLIP interactions:1 interactions with chain A- Water bridges: A:D.188
- 15 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.3: 3 residues within 4Å:- Chain A: N.38, T.318, L.381
1 PLIP interactions:1 interactions with chain A- Water bridges: A:T.318
NAG.4: 3 residues within 4Å:- Chain A: E.62, N.63, Y.94
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:N.63, A:Y.94
- Water bridges: A:N.63, A:N.63, A:K.92
NAG.5: 2 residues within 4Å:- Chain A: N.126, T.128
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:T.128
NAG.6: 2 residues within 4Å:- Chain A: N.133
- Ligands: EPE.8
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.133
- Water bridges: A:Q.132
NAG.7: 4 residues within 4Å:- Chain A: S.45, N.285, V.297, N.298
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:N.285, A:V.297, A:N.298
- Water bridges: A:V.297
NAG.16: 3 residues within 4Å:- Chain B: N.38, T.318, L.381
1 PLIP interactions:1 interactions with chain B- Water bridges: B:T.318
NAG.17: 3 residues within 4Å:- Chain B: E.62, N.63, Y.94
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:N.63, B:Y.94
- Water bridges: B:N.63, B:N.63, B:K.92
NAG.18: 2 residues within 4Å:- Chain B: N.126, T.128
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:T.128
NAG.19: 2 residues within 4Å:- Chain B: N.133
- Ligands: EPE.21
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:N.133
- Water bridges: B:Q.132
NAG.20: 4 residues within 4Å:- Chain B: S.45, N.285, V.297, N.298
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:N.285, B:V.297, B:N.298
- Water bridges: B:V.297
NAG.29: 3 residues within 4Å:- Chain C: N.38, T.318, L.381
1 PLIP interactions:1 interactions with chain C- Water bridges: C:T.318
NAG.30: 3 residues within 4Å:- Chain C: E.62, N.63, Y.94
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:N.63, C:Y.94
- Water bridges: C:N.63, C:N.63, C:K.92
NAG.31: 2 residues within 4Å:- Chain C: N.126, T.128
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:T.128
NAG.32: 2 residues within 4Å:- Chain C: N.133
- Ligands: EPE.34
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:N.133
- Water bridges: C:Q.132
NAG.33: 4 residues within 4Å:- Chain C: S.45, N.285, V.297, N.298
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:N.285, C:V.297, C:N.298
- Water bridges: C:V.297
- 9 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)
EPE.8: 10 residues within 4Å:- Chain A: D.77, Q.80, R.141, S.146, F.147, F.148, S.149, L.151, R.255
- Ligands: NAG.6
8 PLIP interactions:8 interactions with chain A- Hydrogen bonds: A:D.77, A:Q.80, A:Q.80, A:R.255
- Water bridges: A:D.77, A:G.134, A:L.151
- Salt bridges: A:R.141
EPE.9: 8 residues within 4Å:- Chain A: S.95, Y.98, P.99, Y.100, Y.105, R.224, S.400, E.401
9 PLIP interactions:8 interactions with chain A, 1 interactions with chain C- Hydrogen bonds: A:S.95, A:S.95, A:S.95, A:Y.100, A:Y.100, A:S.400, A:S.400
- Salt bridges: A:R.224
- Water bridges: C:R.208
EPE.10: 5 residues within 4Å:- Chain A: N.81, E.119, F.120, N.121, N.122
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:N.81, A:K.83, A:F.120, A:N.122, A:N.122
EPE.21: 10 residues within 4Å:- Chain B: D.77, Q.80, R.141, S.146, F.147, F.148, S.149, L.151, R.255
- Ligands: NAG.19
8 PLIP interactions:8 interactions with chain B- Hydrogen bonds: B:D.77, B:Q.80, B:Q.80, B:R.255
- Water bridges: B:D.77, B:G.134, B:L.151
- Salt bridges: B:R.141
EPE.22: 8 residues within 4Å:- Chain B: S.95, Y.98, P.99, Y.100, Y.105, R.224, S.400, E.401
9 PLIP interactions:8 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:S.95, B:S.95, B:S.95, B:Y.100, B:Y.100, B:S.400, B:S.400
- Salt bridges: B:R.224
- Water bridges: A:R.208
EPE.23: 5 residues within 4Å:- Chain B: N.81, E.119, F.120, N.121, N.122
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:N.81, B:K.83, B:F.120, B:N.122, B:N.122
EPE.34: 10 residues within 4Å:- Chain C: D.77, Q.80, R.141, S.146, F.147, F.148, S.149, L.151, R.255
- Ligands: NAG.32
8 PLIP interactions:8 interactions with chain C- Hydrogen bonds: C:D.77, C:Q.80, C:Q.80, C:R.255
- Water bridges: C:D.77, C:G.134, C:L.151
- Salt bridges: C:R.141
EPE.35: 8 residues within 4Å:- Chain C: S.95, Y.98, P.99, Y.100, Y.105, R.224, S.400, E.401
9 PLIP interactions:8 interactions with chain C, 1 interactions with chain B- Hydrogen bonds: C:S.95, C:S.95, C:S.95, C:Y.100, C:Y.100, C:S.400, C:S.400
- Salt bridges: C:R.224
- Water bridges: B:R.208
EPE.36: 5 residues within 4Å:- Chain C: N.81, E.119, F.120, N.121, N.122
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:N.81, C:K.83, C:F.120, C:N.122, C:N.122
- 3 x TAM: TRIS(HYDROXYETHYL)AMINOMETHANE(Non-covalent)
TAM.11: 4 residues within 4Å:- Chain A: R.383, L.384
- Chain B: Y.423, E.426
3 PLIP interactions:1 interactions with chain B, 2 interactions with chain A- Hydrophobic interactions: B:Y.423, A:L.384
- Hydrogen bonds: A:R.383
TAM.24: 4 residues within 4Å:- Chain B: R.383, L.384
- Chain C: Y.423, E.426
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain C- Hydrophobic interactions: B:L.384, C:Y.423
- Hydrogen bonds: B:R.383
TAM.37: 4 residues within 4Å:- Chain A: Y.423, E.426
- Chain C: R.383, L.384
3 PLIP interactions:2 interactions with chain C, 1 interactions with chain A- Hydrophobic interactions: C:L.384, A:Y.423
- Hydrogen bonds: C:R.383
- 3 x SIA: N-acetyl-alpha-neuraminic acid(Non-covalent)
SIA.12: 11 residues within 4Å:- Chain A: G.134, T.135, S.136, S.137, N.145, W.153, T.155, D.190, F.193, L.194
- Ligands: CMO.13
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:W.153, A:T.155
- Hydrogen bonds: A:T.135, A:S.137
- Water bridges: A:T.135, A:T.135, A:T.135
SIA.25: 11 residues within 4Å:- Chain B: G.134, T.135, S.136, S.137, N.145, W.153, T.155, D.190, F.193, L.194
- Ligands: CMO.26
7 PLIP interactions:7 interactions with chain B- Hydrophobic interactions: B:W.153, B:T.155
- Hydrogen bonds: B:T.135, B:S.137
- Water bridges: B:T.135, B:T.135, B:T.135
SIA.38: 11 residues within 4Å:- Chain C: G.134, T.135, S.136, S.137, N.145, W.153, T.155, D.190, F.193, L.194
- Ligands: CMO.39
7 PLIP interactions:7 interactions with chain C- Hydrophobic interactions: C:W.153, C:T.155
- Hydrogen bonds: C:T.135, C:S.137
- Water bridges: C:T.135, C:T.135, C:T.135
- 3 x CMO: CARBON MONOXIDE(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lin, Y.P. et al., Evolution of the Receptor Binding Properties of the Influenza A(H3N2) Hemagglutinin. Proc.Natl.Acad.Sci.USA (2012)
- Release Date
- 2012-11-07
- Peptides
- HEMAGGLUTININ: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.79 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x NAG- NAG- MAN: alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 15 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 9 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)
- 3 x TAM: TRIS(HYDROXYETHYL)AMINOMETHANE(Non-covalent)
- 3 x SIA: N-acetyl-alpha-neuraminic acid(Non-covalent)
- 3 x CMO: CARBON MONOXIDE(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lin, Y.P. et al., Evolution of the Receptor Binding Properties of the Influenza A(H3N2) Hemagglutinin. Proc.Natl.Acad.Sci.USA (2012)
- Release Date
- 2012-11-07
- Peptides
- HEMAGGLUTININ: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A