SMTL ID : 2ypa.1

Structure of the SCL:E47:LMO2:LDB1 complex bound to DNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain C: C.111, C.114, C.133, D.136 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.111, C:C.114, C:C.133, C:D.136 ZN.2: 4 residues within 4Å: Chain C: C.83, C.86, H.105, C.108 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.83, C:C.86, C:H.105, C:C.108 ZN.3: 5 residues within 4Å: Chain C: C.46, C.49, C.51, C.69, D.72 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.46, C:C.49, C:C.69, C:D.72 ZN.4: 4 residues within 4Å: Chain C: C.19, C.22, H.40, C.43 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.19, C:C.22, C:H.40, C:C.43

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

El Omari, K. et al., Structural Basis for Lmo2-Driven Recruitment of the Scl:E47bHLH Heterodimer to Hematopoietic-Specific Transcriptional Targets. Cell Rep. (2013)

Release Date

2013-07-31

Peptides

T-CELL ACUTE LYMPHOCYTIC LEUKEMIA PROTEIN 1: A
TRANSCRIPTION FACTOR E2-ALPHA: B
RHOMBOTIN-2: C
LIM DOMAIN-BINDING PROTEIN 1: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

T-CELL ACUTE LYMPHOCYTIC LEUKEMIA PROTEIN 1

TRANSCRIPTION FACTOR E2-ALPHA

RHOMBOTIN-2

LIM DOMAIN-BINDING PROTEIN 1

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