SMTL ID : 2ypd.1 (1 other biounit)

Crystal structure of the Jumonji domain of human Jumonji domain containing 1C protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

6 x EMT: 2-(ETHYLMERCURI-THIO)-BENZOIC ACID(Non-covalent)

EMT.1: 7 residues within 4Å: Chain A: C.8, E.9, H.11, R.291, T.292, C.293 Ligands: EMT.2 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:H.11 Metal complexes: A:C.8 EMT.2: 6 residues within 4Å: Chain A: H.11, I.238, A.240, R.291, C.293 Ligands: EMT.1 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:C.293 EMT.3: 4 residues within 4Å: Chain A: E.29, C.30, Q.33, Q.35 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:C.30 EMT.4: 5 residues within 4Å: Chain A: C.70, K.105, G.176, T.177, N.179 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:C.70 EMT.5: 6 residues within 4Å: Chain A: K.105, K.107, D.108, C.162, T.178 Ligands: EMT.6 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Hydrophobic interactions: A:T.178 Metal complexes: A:D.108, H2O.3 EMT.6: 5 residues within 4Å: Chain A: C.162, T.178, V.313, Q.321 Ligands: EMT.5 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:C.162

1 x NA: SODIUM ION(Non-functional Binders)

NA.7: 4 residues within 4Å: Chain A: M.119, P.120, A.121, R.122 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:M.119, A:A.121, A:R.122, A:R.122

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vollmar, M. et al., Crystal Structure of the Jumonji Domain of Human Jumonji Domain Containing 1C Protein. To be Published

Release Date

2012-12-12

Peptides

PROBABLE JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROT EIN 2C: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PROBABLE JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROT EIN 2C

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