SMTL ID : 2ype.1

Catalytic domain of mouse 2',3'-cyclic nucleotide 3'- phosphodiesterase, with mutation H309S, crystallized with 2',3'- cyclic AMP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

2 x ACY: ACETIC ACID(Non-functional Binders)

ACY.1: 5 residues within 4Å: Chain A: A.185, V.186, G.187, E.188, K.193 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.185 Water bridges: A:K.193 Salt bridges: A:K.193 ACY.3: 6 residues within 4Å: Chain A: Y.63, P.115, K.116, A.158, D.160, V.161 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.63, A:D.160 Salt bridges: A:K.116

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: K.116, D.160, V.161 Ligand excluded by PLIP

1 x ACK: 2',3'- cyclic AMP(Non-covalent)

ACK.4: 9 residues within 4Å: Chain A: L.10, Y.11, H.73, T.75, F.78, R.150, T.154, P.163, V.164 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:T.75, A:R.150, A:P.163 Water bridges: A:T.75, A:F.78, A:F.78, A:R.150, A:R.150, A:R.150, A:T.154, A:T.154, A:V.164, A:T.166 Salt bridges: A:H.73 pi-Stacking: A:F.78

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Myllykoski, M. et al., Crystallographic Analysis of the Reaction Cycle of 2',3'-Cyclic Nucleotide 3'-Phosphodiesterase, a Unique Member of the 2H Phosphoesterase Family. J.Mol.Biol. (2013)

Release Date

2013-07-10

Peptides

2', 3'-CYCLIC-NUCLEOTIDE 3'-PHOSPHODIESTERASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

2', 3'-CYCLIC-NUCLEOTIDE 3'-PHOSPHODIESTERASE

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