SMTL ID : 2yph.1

Catalytic domain of mouse 2',3'-cyclic nucleotide 3'- phosphodiesterase, with mutation H230S, crystallized with 2',3-(RP)- cyclic-AMPS

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 8 residues within 4Å: Chain A: K.66, R.67, P.68, P.69, T.154, G.156, C.157, P.163 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:P.68

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: K.116, D.160, V.161 Ligand excluded by PLIP

1 x QQY: [(3aR,4R,6R,6aR)-4-(6-aminopurin-9-yl)-2-oxidanylidene-2-sulfanyl-3a,4,6,6a-tetrahydrofuro[3,4-d][1,3,2]dioxaphosphol-6-yl]methanol(Non-covalent)

QQY.3: 9 residues within 4Å: Chain A: L.10, Y.11, T.75, F.78, H.152, T.154, P.163, V.164, T.166 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.75, A:H.152, A:T.154 Water bridges: A:T.75, A:T.75, A:T.154 pi-Stacking: A:F.78

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Myllykoski, M. et al., Crystallographic Analysis of the Reaction Cycle of 2',3'-Cyclic Nucleotide 3'-Phosphodiesterase, a Unique Member of the 2H Phosphoesterase Family. J.Mol.Biol. (2013)

Release Date

2013-07-10

Peptides

2', 3'-CYCLIC-NUCLEOTIDE 3'-PHOSPHODIESTERASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

2', 3'-CYCLIC-NUCLEOTIDE 3'-PHOSPHODIESTERASE

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