SMTL ID : 2ypv.1

Crystal structure of the Meningococcal vaccine antigen factor H binding protein in complex with a bactericidal antibody

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-1-1-1-mer

Ligands

9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 1 residues within 4Å: Chain A: H.202 2 PLIP interactions: 2 interactions with chain A Water bridges: A:S.137, A:S.137 EDO.2: 4 residues within 4Å: Chain A: I.131, H.135, V.204, G.222 2 PLIP interactions: 2 interactions with chain A Water bridges: A:D.198, A:S.220 EDO.3: 3 residues within 4Å: Chain A: N.175, G.176, K.177 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.175 EDO.4: 3 residues within 4Å: Chain B: K.63, F.64, K.67 3 PLIP interactions: 3 interactions with chain B Water bridges: B:K.38, B:K.38, B:E.46 EDO.5: 3 residues within 4Å: Chain B: V.72, D.73, Q.74 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:V.72, B:Q.74, B:Q.74 Water bridges: B:A.75 EDO.6: 6 residues within 4Å: Chain B: A.24, S.25, G.26, Y.27, F.29, S.77 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:A.24, B:G.26, B:Y.27, B:F.29, B:S.77 Water bridges: B:S.28, B:S.30, B:S.77 EDO.7: 6 residues within 4Å: Chain B: V.93, Q.111, G.112, T.113, T.114 Chain C: G.41 3 PLIP interactions: 1 interactions with chain C, 2 interactions with chain B Hydrogen bonds: C:G.41, B:T.114, B:T.114 EDO.8: 2 residues within 4Å: Chain B: P.206, S.209 No protein-ligand interaction detected (PLIP) EDO.9: 6 residues within 4Å: Chain B: G.42, Y.95 Chain C: Q.38, K.39, G.41, K.42 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:G.41, C:K.42, B:Y.95

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Malito, E. et al., Defining a Protective Epitope on Factor H Binding Protein, a Key Meningococcal Virulence Factor and Vaccine Antigen. Proc.Natl.Acad.Sci.USA (2013)

Release Date

2013-02-20

Peptides

LIPOPROTEIN: A
FAB 12C1: B
FAB 12C1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
H

C
L

LIPOPROTEIN

FAB 12C1

FAB 12C1

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