SMTL ID : 2yq5.1

Crystal Structure of D-isomer specific 2-hydroxyacid dehydrogenase from Lactobacillus delbrueckii ssp. bulgaricus: NAD complexed form

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.75 Å

Oligo State

homo-tetramer

Ligands

4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 22 residues within 4Å: Chain A: Y.102, I.107, G.155, V.156, G.157, H.158, I.159, Y.177, D.178, V.179, A.180, H.207, T.208, P.209, T.214, C.235, A.236, R.237, D.261, H.298, A.300, F.301 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:I.107, A:I.159 Hydrogen bonds: A:G.157, A:H.158, A:H.158, A:I.159, A:V.179, A:A.180, A:T.208, A:D.261, A:A.300, A:F.301 NAD.2: 22 residues within 4Å: Chain B: Y.102, I.107, I.154, G.155, V.156, G.157, H.158, I.159, Y.177, D.178, V.179, A.180, H.207, T.208, P.209, C.235, A.236, R.237, D.261, H.298, A.300, F.301 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:I.107, B:I.107, B:I.159 Hydrogen bonds: B:V.156, B:V.156, B:H.158, B:H.158, B:I.159, B:V.179, B:T.208, B:D.261, B:F.301 NAD.3: 22 residues within 4Å: Chain C: Y.102, I.107, G.155, V.156, G.157, H.158, I.159, Y.177, D.178, V.179, A.180, H.207, T.208, P.209, M.217, C.235, A.236, R.237, D.261, H.298, A.300, F.301 13 PLIP interactions: 13 interactions with chain C Hydrophobic interactions: C:I.107, C:I.159 Hydrogen bonds: C:V.156, C:H.158, C:I.159, C:V.179, C:T.208, C:D.261, C:D.261, C:F.301 Water bridges: C:G.157, C:G.160 Salt bridges: C:H.158 NAD.4: 22 residues within 4Å: Chain D: Y.102, I.107, G.155, V.156, G.157, H.158, I.159, Y.177, D.178, V.179, A.180, H.207, T.208, P.209, M.217, C.235, A.236, R.237, D.261, H.298, A.300, F.301 13 PLIP interactions: 13 interactions with chain D Hydrophobic interactions: D:I.107, D:I.107 Hydrogen bonds: D:V.156, D:G.157, D:H.158, D:I.159, D:G.160, D:V.179, D:T.208, D:D.261, D:D.261, D:A.300, D:F.301

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Holton, S.J. et al., Structural Characterization of D-Isomer Specific 2-Hydroxyacid Dehydrogenase from Lactobacillus Delbrueckii Ssp. Bulgaricus. J.Struct.Biol. (2013)

Release Date

2012-11-21

Peptides

D-ISOMER SPECIFIC 2-HYDROXYACID DEHYDROGENASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

D-ISOMER SPECIFIC 2-HYDROXYACID DEHYDROGENASE

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