SMTL ID : 2yqj.1 (1 other biounit)

Crystal Structure of uridine-diphospho-N-acetylglucosamine pyrophosphorylase from Candida albicans, in the reaction-completed form

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.31 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: G.114, T.115, R.116 Ligands: UD1.4 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:G.114, A:T.115, A:T.115, A:R.116 Water bridges: A:Q.113 Salt bridges: A:R.116, A:K.123 SO4.2: 4 residues within 4Å: Chain A: R.285, K.328, R.332, E.410 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.410 Salt bridges: A:R.285, A:K.328, A:R.332

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 3 residues within 4Å: Chain A: N.74, T.77, A.78 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:N.74, A:T.77, A:T.77, H2O.6

1 x UD1: URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE(Non-covalent)

UD1.4: 24 residues within 4Å: Chain A: M.109, A.110, G.111, G.112, R.116, M.168, Q.199, P.224, G.226, N.227, C.255, V.256, D.257, V.293, G.294, E.309, Y.310, N.335, V.337, F.393, F.395, F.417, K.421 Ligands: SO4.1 27 PLIP interactions: 27 interactions with chain A Hydrophobic interactions: A:F.393, A:F.395 Hydrogen bonds: A:G.111, A:G.112, A:R.116, A:Q.199, A:Q.199, A:G.226, A:N.227, A:V.256, A:D.257, A:G.294, A:E.309, A:E.309, A:Y.310, A:N.335, A:K.421 Water bridges: A:R.116, A:K.123, A:D.257, A:D.257, A:E.309, A:E.309 Salt bridges: A:R.116, A:K.421, A:K.421, A:K.421

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 4 residues within 4Å: Chain A: I.195, F.196, F.197, N.237 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.237 Water bridges: A:V.194, A:N.198

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maruyama, D. et al., Crystal Structure of Uridine-diphospho-N-acetylglucosamine Pyrophosphorylase from Candida albicans and Catalytic Reaction Mechanism. J.Biol.Chem. (2007)

Release Date

2007-05-22

Peptides

UDP-N-acetylglucosamine pyrophosphorylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

UDP-N-acetylglucosamine pyrophosphorylase

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