SMTL ID : 2yu1.1

Crystal structure of hJHDM1A complexed with a-ketoglutarate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x FE2: FE (II) ION(Non-covalent)

FE2.1: 4 residues within 4Å: Chain A: H.212, D.214, H.284 Ligands: AKG.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.212, A:D.214, A:D.214, A:H.284

1 x AKG: 2-OXOGLUTARIC ACID(Non-covalent)

AKG.2: 10 residues within 4Å: Chain A: N.142, I.144, T.209, H.212, D.214, Y.222, K.229, H.284, V.286 Ligands: FE2.1 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:I.144, A:T.209, A:V.286 Hydrogen bonds: A:T.209, A:Y.222 Water bridges: A:T.209, A:T.209 Salt bridges: A:H.212, A:K.229, A:H.284

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Han, Z. et al., Structural basis for histone demethylation by JHDM1. To be Published

Release Date

2007-04-24

Peptides

JmjC domain-containing histone demethylation protein 1A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

JmjC domain-containing histone demethylation protein 1A

Related Entries With Identical Sequence