SMTL ID : 2yv5.1

Crystal structure of Yjeq from Aquifex aeolicus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.257, H.259, C.265 Ligands: CL.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.257, A:H.259, A:C.265

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 7 residues within 4Å: Chain A: Y.254, C.257, H.259, C.265, A.266, V.267 Ligands: ZN.1 Ligand excluded by PLIP

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.3: 15 residues within 4Å: Chain A: N.118, K.119, D.121, L.122, S.149, A.150, K.151, P.173, S.174, G.175, V.176, G.177, K.178, S.179, S.180 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:N.118, A:K.119, A:K.119, A:A.150, A:K.151, A:G.175, A:V.176, A:G.177, A:K.178, A:S.179, A:S.180, A:S.180 Water bridges: A:K.119, A:S.174, A:K.178, A:K.178 Salt bridges: A:D.121, A:K.178

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, H. et al., Crystal structure of YjeQ from Aquifex aeolicus. To be Published

Release Date

2008-04-15

Peptides

YjeQ protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

YjeQ protein