SMTL ID : 2yvm.1

Crystal structure of NDX2 in complex with MG2+ from thermus thermophilus HB8

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

4 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: A.74, E.90, E.94, E.139 Ligands: MG.2 6 PLIP interactions: 3 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.90, A:E.94, A:E.139, H2O.1, H2O.1, H2O.2 MG.2: 5 residues within 4Å: Chain A: A.74, E.90, E.94, E.139 Ligands: MG.1 6 PLIP interactions: 2 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:A.74, A:E.94, H2O.1, H2O.1, H2O.1, H2O.2 MG.3: 5 residues within 4Å: Chain B: A.74, E.90, E.94, E.139 Ligands: MG.4 6 PLIP interactions: 3 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:E.90, B:E.94, B:E.139, H2O.6, H2O.6, H2O.7 MG.4: 5 residues within 4Å: Chain B: A.74, E.90, E.94, E.139 Ligands: MG.3 6 PLIP interactions: 2 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:A.74, B:E.94, H2O.6, H2O.6, H2O.6, H2O.7

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wakamatsu, T. et al., Structural basis for different substrate specificities of two ADP-ribose pyrophosphatases from Thermus thermophilus HB8. J.Bacteriol. (2008)

Release Date

2008-02-26

Peptides

MutT/nudix family protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

MutT/nudix family protein

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