SMTL ID : 2yyl.1

Crystal structure of the mutant of HpaB (T198I, A276G, and R466H) complexed with FAD

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-tetramer

Ligands

12 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: Q.85, W.336, T.337 Chain B: R.338 8 PLIP interactions: 5 interactions with chain B, 3 interactions with chain A Water bridges: B:R.338, B:R.338, B:R.338, B:E.342 Salt bridges: B:R.338, A:K.81 Hydrogen bonds: A:W.336, A:T.337 SO4.2: 5 residues within 4Å: Chain A: I.73, A.113, R.127, Y.130, R.131 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.131 SO4.3: 5 residues within 4Å: Chain A: N.128, Y.129, Y.132, E.260, R.261 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.128 Salt bridges: A:R.261 SO4.5: 4 residues within 4Å: Chain A: R.338 Chain B: Q.85, W.336, T.337 8 PLIP interactions: 3 interactions with chain B, 5 interactions with chain A Hydrogen bonds: B:W.336, B:T.337 Salt bridges: B:K.81, A:R.338 Water bridges: A:R.338, A:R.338, A:R.338, A:E.342 SO4.6: 5 residues within 4Å: Chain B: I.73, A.113, R.127, Y.130, R.131 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.131 SO4.7: 5 residues within 4Å: Chain B: N.128, Y.129, Y.132, E.260, R.261 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.128 Salt bridges: B:R.261 SO4.9: 4 residues within 4Å: Chain C: Q.85, W.336, T.337 Chain D: R.338 6 PLIP interactions: 2 interactions with chain C, 4 interactions with chain D Hydrogen bonds: C:W.336 Salt bridges: C:K.81, D:R.338 Water bridges: D:R.338, D:R.338, D:R.338 SO4.10: 5 residues within 4Å: Chain C: I.73, A.113, R.127, Y.130, R.131 1 PLIP interactions: 1 interactions with chain C Salt bridges: C:R.131 SO4.11: 5 residues within 4Å: Chain C: N.128, Y.129, Y.132, E.260, R.261 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:N.128 Salt bridges: C:R.261 SO4.13: 4 residues within 4Å: Chain C: R.338 Chain D: Q.85, W.336, T.337 6 PLIP interactions: 2 interactions with chain D, 4 interactions with chain C Hydrogen bonds: D:W.336 Salt bridges: D:K.81, C:R.338 Water bridges: C:R.338, C:R.338, C:R.338 SO4.14: 5 residues within 4Å: Chain D: I.73, A.113, R.127, Y.130, R.131 1 PLIP interactions: 1 interactions with chain D Salt bridges: D:R.131 SO4.15: 5 residues within 4Å: Chain D: N.128, Y.129, Y.132, E.260, R.261 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:N.128 Salt bridges: D:R.261

4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.4: 27 residues within 4Å: Chain A: R.100, H.142, A.143, L.144, Q.148, R.151, T.183, T.185, D.247, R.433, L.436, Y.437, F.440, F.441, G.443, D.444, V.446, R.447 Chain C: I.310, A.312, Y.315, H.317, V.318, Q.378, I.379, A.381, S.382 32 PLIP interactions: 9 interactions with chain C, 23 interactions with chain A Hydrogen bonds: C:I.379, C:S.382, C:S.382, C:S.382, C:S.382, A:H.142, A:L.144, A:T.145, A:Q.148, A:T.185, A:T.185, A:F.440, A:F.441, A:D.444, A:D.444, A:R.447 Water bridges: C:Y.315, C:Y.315, A:R.100, A:H.142, A:T.145, A:T.145, A:R.447 pi-Stacking: C:Y.315, C:Y.315 Hydrophobic interactions: A:L.436, A:Y.437, A:Y.437 Salt bridges: A:R.151, A:R.151, A:R.447 pi-Cation interactions: A:R.447 FAD.8: 27 residues within 4Å: Chain B: R.100, H.142, A.143, L.144, Q.148, R.151, T.183, T.185, D.247, R.433, L.436, Y.437, F.440, F.441, G.443, D.444, V.446, R.447 Chain D: I.310, A.312, Y.315, H.317, V.318, Q.378, I.379, A.381, S.382 32 PLIP interactions: 23 interactions with chain B, 9 interactions with chain D Hydrophobic interactions: B:L.436, B:Y.437, B:Y.437 Hydrogen bonds: B:H.142, B:L.144, B:T.145, B:Q.148, B:T.185, B:T.185, B:F.440, B:F.441, B:D.444, B:D.444, B:R.447, D:I.379, D:S.382, D:S.382, D:S.382, D:S.382 Water bridges: B:R.100, B:H.142, B:T.145, B:T.145, B:R.447, D:Y.315, D:Y.315 Salt bridges: B:R.151, B:R.151, B:R.447 pi-Cation interactions: B:R.447 pi-Stacking: D:Y.315, D:Y.315 FAD.12: 27 residues within 4Å: Chain A: I.310, A.312, Y.315, H.317, V.318, Q.378, I.379, A.381, S.382 Chain C: R.100, H.142, A.143, L.144, Q.148, R.151, T.183, T.185, D.247, R.433, L.436, Y.437, F.440, F.441, G.443, D.444, V.446, R.447 30 PLIP interactions: 22 interactions with chain C, 8 interactions with chain A Hydrophobic interactions: C:L.436, C:Y.437, C:Y.437 Hydrogen bonds: C:H.142, C:L.144, C:T.145, C:Q.148, C:T.185, C:T.185, C:F.440, C:F.441, C:D.444, C:D.444, C:R.447, A:I.379, A:S.382, A:S.382, A:S.382, A:S.382 Water bridges: C:R.100, C:T.141, C:H.142, C:R.447, A:Y.315 Salt bridges: C:R.151, C:R.151, C:R.447 pi-Cation interactions: C:R.447 pi-Stacking: A:Y.315, A:Y.315 FAD.16: 27 residues within 4Å: Chain B: I.310, A.312, Y.315, H.317, V.318, Q.378, I.379, A.381, S.382 Chain D: R.100, H.142, A.143, L.144, Q.148, R.151, T.183, T.185, D.247, R.433, L.436, Y.437, F.440, F.441, G.443, D.444, V.446, R.447 30 PLIP interactions: 22 interactions with chain D, 8 interactions with chain B Hydrophobic interactions: D:L.436, D:Y.437, D:Y.437 Hydrogen bonds: D:H.142, D:L.144, D:T.145, D:Q.148, D:T.185, D:T.185, D:F.440, D:F.441, D:D.444, D:D.444, D:R.447, B:I.379, B:S.382, B:S.382, B:S.382, B:S.382 Water bridges: D:R.100, D:T.141, D:H.142, D:R.447, B:Y.315 Salt bridges: D:R.151, D:R.151, D:R.447 pi-Cation interactions: D:R.447 pi-Stacking: B:Y.315, B:Y.315

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, S.-H. et al., Crystal Structure of the Oxygenase Component (HpaB) of the 4-Hydroxyphenylacetate 3-Monooxygenase from Thermus thermophilus HB8. J.Biol.Chem. (2007)

Release Date

2007-09-04

Peptides

4-hydroxyphenylacetate-3-hydroxylase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

4-hydroxyphenylacetate-3-hydroxylase

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