SMTL ID : 2yyy.1

Crystal structure of Glyceraldehyde-3-phosphate dehydrogenase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-dimer

Ligands

2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 22 residues within 4Å: Chain B: N.8, G.9, Y.10, G.11, S.12, I.13, K.34, T.35, K.36, A.54, G.88, A.89, P.90, I.93, N.97, Q.112, G.114, C.144, R.172, D.175, Q.307, E.308 22 PLIP interactions: 22 interactions with chain B Hydrophobic interactions: B:I.13 Hydrogen bonds: B:Y.10, B:S.12, B:I.13, B:T.35, B:T.35, B:K.36, B:N.97, B:G.114, B:E.115, B:R.172, B:D.175 Water bridges: B:N.8, B:G.11, B:S.12, B:S.12, B:G.14, B:K.34, B:K.36, B:A.89, B:N.97 Salt bridges: B:K.34 NAP.2: 24 residues within 4Å: Chain A: N.8, G.9, Y.10, G.11, S.12, I.13, K.34, T.35, K.36, A.54, I.55, G.88, A.89, P.90, I.93, N.97, Q.112, G.114, C.144, R.172, D.175, Q.307, E.308, V.311 27 PLIP interactions: 27 interactions with chain A Hydrophobic interactions: A:I.13, A:V.311 Hydrogen bonds: A:N.8, A:Y.10, A:S.12, A:S.12, A:I.13, A:T.35, A:T.35, A:K.36, A:N.97, A:G.114, A:R.172, A:D.175 Water bridges: A:G.11, A:S.12, A:S.12, A:G.14, A:K.34, A:K.34, A:A.54, A:A.89, A:K.91, A:N.97, A:D.175, A:N.177 Salt bridges: A:K.34

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Malay, A.D. et al., Structure of glyceraldehyde-3-phosphate dehydrogenase from the archaeal hyperthermophile Methanocaldococcus jannaschii. Acta Crystallogr.,Sect.F (2009)

Release Date

2007-11-06

Peptides

Glyceraldehyde-3-phosphate dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glyceraldehyde-3-phosphate dehydrogenase